>CFD543 (CFD543Q) /CSM/CF/CFD5-B/CFD543Q.Seq.d/
GTTTTTATTTTTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTA
TTATTTGGTAAAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCA
AATTCATGTGCAGCATACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTC
TTATTCCAAAGAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGC
CCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGA
AATTTCCAAGCTGGTCAAAAGATTTGCCCACATGGCCAGCAAGAAACCATGCGACTGCAT
TAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAAAAATGACATCAGATGCTCCCGCAG
ATCCAAGTCGAGATGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTA
CAAAATATTATGAAAATACAAATAATGCAACATGTACTGCATGTTTTGATTTACCAATGG
ATATTTCTCCAGGTTTATATATTCTTCAATTTTTCTGGGAGTTTAATCCAAAGGAATATT
ATTTAACATGTGCTGATATAATGATTTCXXXXXXXXXX

VFIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEQQGDGF
LFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPHGQQETMRLH
*elvplvstflqk*hqmlpqiqvemysskiqsiqahletvqnimkiqimqhvlhvliyqw
iflqvyiffnfsgsliqrnii*hvli**f---

Frame A:
VFIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYRFYEQQGDGF
LFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPHGQQETMRLH
*elvplvstflqk*hqmlpqiqvemysskiqsiqahletvqnimkiqimqhvlhvliyqw
iflqvyiffnfsgsliqrnii*hvli**f---


Frame B:
flfflk*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqetidfmnnkamvs
yskevnsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfahmaskkpcdci
kswyr*flpfskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnmycmf*ftng
yfsrfiyssiflgv*skgilfnmc*ynd---


Frame C:
fyff*neknniifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*ttrrwfl
ipkr*ihktipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlptwparnhatal
ragtvsfylspkmtsdapadpsrdvffqnsihsspfgnctkyyentnnatctacfdlpmd
ispglyilqffwefnpkeyyltcadimi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD543 (CFD543Q) /CSM/CF/CFD5-B/CFD543Q.Seq.d/                       1189   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                       1168   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                       1168   0.0
SFB148 (SFB148Q) /CSM/SF/SFB1-B/SFB148Q.Seq.d/                       1168   0.0
CHC550 (CHC550Q) /CSM/CH/CHC5-C/CHC550Q.Seq.d/                       1168   0.0
CHC131 (CHC131Q) /CSM/CH/CHC1-B/CHC131Q.Seq.d/                       1168   0.0
CHA719 (CHA719Q) /CSM/CH/CHA7-A/CHA719Q.Seq.d/                       1168   0.0
CHA580 (CHA580Q) /CSM/CH/CHA5-D/CHA580Q.Seq.d/                       1168   0.0
CHA267 (CHA267Q) /CSM/CH/CHA2-C/CHA267Q.Seq.d/                       1168   0.0
CHA231 (CHA231Q) /CSM/CH/CHA2-B/CHA231Q.Seq.d/                       1168   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   6e-04  20
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    42   0.005  8
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    32   0.018  13
AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    36   0.025  7
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   0.055  11
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.062  9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    30   0.083  10
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    32   0.13   13
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    34   0.15   11
AC093729|AC093729.2 Homo sapiens BAC clone RP11-11N6 from 4, complete sequence.    34   0.18   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY808643_1(AY808643|pid:none) Schistosoma japonicum SJCHGC03558 ...    34   3.0
FN314387_1(FN314387|pid:none) Schistosoma japonicum isolate Anhu...    34   3.0
AB037166_1(AB037166|pid:none) Clostridium botulinum genes for OR...    33   5.1
EF568108_61(EF568108|pid:none) Glossina pallidipes salivary glan...    33   5.1
AB037920_1(AB037920|pid:none) Clostridium botulinum genes for OR...    33   5.1
A97307(A97307) uncharacterized conserved protein CAC3312 [import...    33   6.6
CP000571_2857(CP000571|pid:none) Burkholderia pseudomallei 668 c...    33   8.7

 psg: 0.98  gvh: 0.72  alm: 0.58  top: 0.23  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFD543 is exc

>CFD543F.Seq
GTTTTTATTTTTTTTAAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTA
TTATTTGGTAAAATTGAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCA
AATTCATGTGCAGCATACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTC
TTATTCCAAAGAGGTAAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGC
CCAGCACAAAGAAGAAGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGA
AATTTCCAAGCTGGTCAAAAGATTTGCCCACATGGCCAGCAAGAAACCATGCGACTGCAT
TAAGAGCTGGTACCGTTAGTTTCTACCTTTCTCCAAAAATGACATCAGATGCTCCCGCAG
ATCCAAGTCGAGATGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTA
CAAAATATTATGAAAATACAAATAATGCAACATGTACTGCATGTTTTGATTTACCAATGG
ATATTTCTCCAGGTTTATATATTCTTCAATTTTTCTGGGAGTTTAATCCAAAGGAATATT
ATTTAACATGTGCTGATATAATGATTTC----------