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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD536
Library CF
(Link to library)
Clone ID CFD536
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CFD536P
(Link to Original site)
Representative DNA sequence 
>CFD536 (CFD536Q) /CSM/CF/CFD5-B/CFD536Q.Seq.d/
ATTATCCAGTAGACGATCCATTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGG
AAGGTCGTTCTGCAAACAATGCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTC
AACCACTCTATGATATCGGTGGTATTATGTATAACTCTGTAACAGAAGATATGTATACTG
GTATGAAATTACAAGTTAGTGGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTG
GTACCGCTCCAGTAGATCTTAAAGAAACTTTGGAACAAAGAAAACGTTGGGCTCAAGGTG
CAGTTGAAATTTTCTCTCTCACTCCTTGGGGTTACATTAGAGGTAAACTTGGTTGGAGAA
AGATGCTTTACAATCTTGATTCTTGTATTTATCCATTCCTTTCACCAACTGCTTTCTTCT
ATGGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAA
TCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAGXXXXXXXXXXTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTAC
TTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAA
GATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGT
AGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATC
AAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCAT
TAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTAT
GATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGT
AGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTNCTTC
GTCAAAGTGAAAAACAATGGCCATATGCTTNCTTCATACCATGCTCACAATATTGTTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
YPVDDPLGHRNMEFYGPVMEGRSANNACPFVGTNAIFRRQPLYDIGGIMYNSVTEDMYTG
MKLQVSGYKSWYHNEVLVVGTAPVDLKETLEQRKRWAQGAVEIFSLTPWGYIRGKLGWRK
MLYNLDSCIYPFLSPTAFFYGASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYM
ILR---

---WRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEV
FRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAV
LRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMAXSSK*ktmaicxlhtmltilf
Translated Amino Acid sequence (All Frames) 
Frame A:
iiq*tih*viviwsfmvq*wkvvlqtmpvls*vqtlfsdvnhsmisvvlcitl*qkicil
v*nyklvvtnlgitmkyl*lvplq*ilkklwnkenvglkvqlkfslsllgvtlevnlvge
rcftililvfihsfhqllssmvllh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni
*fle---

---WRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEV
FRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAV
LRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMAXSSK*ktmaicxlhtmltilf

Frame B:
lssrrsirss*ygvlwssngrsfckqclsfrrykryfqtsttl*yrwyyv*lcnrryvyw
yeits*wlqilvsq*stcswyrssrs*rnfgtkktlgsrcs*nflshslglh*r*twlek
dalqs*flylsipftncfllwcfsinyeyldctnrckrsnhfhsrrydscngvtkshsiy
ds*---

---gelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkf
svklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**vly
ldlivskmicgfwls*lvslslpygiyglsfqwllrqsekqwpyaxfipcsqycf

Frame C:
YPVDDPLGHRNMEFYGPVMEGRSANNACPFVGTNAIFRRQPLYDIGGIMYNSVTEDMYTG
MKLQVSGYKSWYHNEVLVVGTAPVDLKETLEQRKRWAQGAVEIFSLTPWGYIRGKLGWRK
MLYNLDSCIYPFLSPTAFFYGASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYM
ILR---

---es*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sf
psn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct
*i*lfpk*yvafgcrswflflylmafmvfhsngxfvkvknnghmlxsyhahniv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD536 (CFD536Q) /CSM/CF/CFD5-B/CFD536Q.Seq.d/                       2068   0.0
SFE645 (SFE645Q) /CSM/SF/SFE6-B/SFE645Q.Seq.d/                       1092   0.0
CHN239 (CHN239Q) /CSM/CH/CHN2-B/CHN239Q.Seq.d/                       1092   0.0
AFA742 (AFA742Q) /CSM/AF/AFA7-B/AFA742Q.Seq.d/                       1092   0.0
CFA490 (CFA490Q) /CSM/CF/CFA4-D/CFA490Q.Seq.d/                       1086   0.0
AFB679 (AFB679Q) /CSM/AF/AFB6-D/AFB679Q.Seq.d/                       1086   0.0
CFJ129 (CFJ129Q) /CSM/CF/CFJ1-B/CFJ129Q.Seq.d/                       1078   0.0
CFI520 (CFI520Q) /CSM/CF/CFI5-A/CFI520Q.Seq.d/                       1078   0.0
AFE444 (AFE444Q) /CSM/AF/AFE4-B/AFE444Q.Seq.d/                       1078   0.0
CFI256 (CFI256Q) /CSM/CF/CFI2-C/CFI256Q.Seq.d/                       1070   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1092   0.0    3
AP000567|AP000567.2 Homo sapiens genomic DNA, chromosome 21q22.1, clone:B41N19, SOD-AML region.    38   0.060  6
AP001708|AP001708.1 Homo sapiens genomic DNA, chromosome 21q, section 52/105.    38   0.23   7
BX572090|BX572090.1 Prochlorococcus marinus MED4 complete genome; segment 1/5.    38   0.28   11
AC024176|AC024176.6 Homo sapiens chromosome 11 clone RP11-5O22, WORKING DRAFT SEQUENCE, 47 unordered pieces.    46   1.0    1
AP006429|AP006429.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322.    36   1.4    5
Z81491|Z81491.1 Caenorhabditis elegans cosmid D1086.               42   2.4    2
AL357080|AL357080.13 Human DNA sequence from clone RP11-432L12 on chromosome 6 Contains  STSs and GSSs.    42   3.1    8
AC092712|AC092712.2 Mus musculus clone RP23-7E10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    32   3.5    8
AC119192|AC119192.3 Mus musculus clone RP24-178H23, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44   4.1    1
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   383   0.0
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...   111   4e-23
CP000828_4747(CP000828|pid:none) Acaryochloris marina MBIC11017,...   106   1e-21
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com...   102   2e-20
EF564001_1(EF564001|pid:none) Phytophthora ramorum cellulose syn...    91   7e-17
EF563999_1(EF563999|pid:none) Phytophthora sojae cellulose synth...    91   9e-17
EF563994_1(EF563994|pid:none) Phytophthora infestans cellulose s...    89   3e-16
EF564002_1(EF564002|pid:none) Phytophthora ramorum cellulose syn...    89   3e-16
EF563993_1(EF563993|pid:none) Phytophthora infestans cellulose s...    88   4e-16
AE001437_1541(AE001437|pid:none) Clostridium acetobutylicum ATCC...    88   6e-16
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.23  top: 0.67  tms: 0.20  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CFD536 is end
5' end seq. ID CFD536F
5' end seq. 
>CFD536F.Seq
ATTATCCAGTAGACGATCCATTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGG
AAGGTCGTTCTGCAAACAATGCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTC
AACCACTCTATGATATCGGTGGTATTATGTATAACTCTGTAACAGAAGATATGTATACTG
GTATGAAATTACAAGTTAGTGGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTG
GTACCGCTCCAGTAGATCTTAAAGAAACTTTGGAACAAAGAAAACGTTGGGCTCAAGGTG
CAGTTGAAATTTTCTCTCTCACTCCTTGGGGTTACATTAGAGGTAAACTTGGTTGGAGAA
AGATGCTTTACAATCTTGATTCTTGTATTTATCCATTCCTTTCACCAACTGCTTTCTTCT
ATGGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAA
TCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAG----------
Length of 5' end seq. 552
3' end seq. ID CFD536Z
3' end seq. 
>CFD536Z.Seq
----------TGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATC
ATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCA
TAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGT
TTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACA
TAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAG
ACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGT
ACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTC
TTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTNCTTCGTCAAAGTGAAA
AACAATGGCCATATGCTTNCTTCATACCATGCTCACAATATTGTTTT
Length of 3' end seq. 517
Connected seq. ID CFD536P
Connected seq. 
>CFD536P.Seq
ATTATCCAGTAGACGATCCATTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGG
AAGGTCGTTCTGCAAACAATGCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTC
AACCACTCTATGATATCGGTGGTATTATGTATAACTCTGTAACAGAAGATATGTATACTG
GTATGAAATTACAAGTTAGTGGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTG
GTACCGCTCCAGTAGATCTTAAAGAAACTTTGGAACAAAGAAAACGTTGGGCTCAAGGTG
CAGTTGAAATTTTCTCTCTCACTCCTTGGGGTTACATTAGAGGTAAACTTGGTTGGAGAA
AGATGCTTTACAATCTTGATTCTTGTATTTATCCATTCCTTTCACCAACTGCTTTCTTCT
ATGGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAA
TCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAG----------TGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTAC
TTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAA
GATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGT
AGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATC
AAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCAT
TAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTAT
GATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGT
AGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTNCTTC
GTCAAAGTGAAAAACAATGGCCATATGCTTNCTTCATACCATGCTCACAATATTGTTTT
Length of connected seq. 1069
Full length Seq ID -
Full length Seq. -
Length of full length seq. -