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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD525
Library CF
(Link to library)
Clone ID CFD525
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16366-1
Original site URL
Representative seq. ID CFD525P
(Link to Original site)
Representative DNA sequence 
>CFD525 (CFD525Q) /CSM/CF/CFD5-B/CFD525Q.Seq.d/
AACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAAGCATTAG
CACAACAACAATACGCAGCACAACAAGCAGCATTGGCGCAACAACAATATGCAGCACAAC
AAGCAGCATTAGCTCAACAAGCAGCATTGGCACAACAACAAGCACAACAAGCAGCTTTAG
CAGCACAACAAGCACAACAACAAGCACAACAACAACAACAACAACAACAACAACAACTAT
TATTACAACAGCGTCAACAACAAGAAGAAGCAGCAGCAAAATTAAAAAACAATAAAACAC
CAAGTAAAGATTCAGTAGTTAGTGGTTTAAATAGATCACCACCACATTCACCAAGAACCA
AAGAAGCACAATCAAAAGAATCAACAGCAGGTGAACAATGTGTGGAATGTAAATCAAAGA
AATCCAATAAAGATTGTAATAATAAGAGATGTAGAGGATGTTGTATTAAATATATGATTG
AAAAGAAATCACACATTTGTTTCCTTCATCTTCGTGATGAATCTAGACGTCXXXXXXXXX
XACATATTCAATCTGAACATACTGAAGACTTTTTTAAATTTCTCAAAGAAAATATAAATT
CAAGAGAATCAACTTCTGCATTACTTTTTAATTCTGATAGTATATATAATAATACAAAAC
AAAAAACAACAGAAAGATTTAATTTAACTATTGAATGGTTAGAAGAATTATTTTCACCAA
TTCCACCACCAGAAGTTACAGATAAAAAGTTTTTTAATAAAAGAAAAGCAATGTTATTAG
AATTTGAATCAAAGTTAAGTTCTTTAATTGATTCTTTTGATGAAAATATAGATCCAGTCA
CTTCAAAATATTCAGTTTTAGAGAATTTATTAAAAGAATCTGATACTTTCCATAAATATT
ATGATAGTTTATCAACTTCTCAAAATAATGAAGAATTAAAAAATATAATTCAACAATATG
AAAATGAAAAAAATGTACATTTTGAACAAAGACCTTTAGTAATTACTCCATATCATCCTT
CAACAGTTTCTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGTGATACCACCT
T
sequence update 2001. 6. 1
Translated Amino Acid sequence 
QLQLQQQLIAQQQAQQQALAQQQYAAQQAALAQQQYAAQQAALAQQAALAQQQAQQAALA
AQQAQQQAQQQQQQQQQQLLLQQRQQQEEAAAKLKNNKTPSKDSVVSGLNRSPPHSPRTK
EAQSKESTAGEQCVECKSKKSNKDCNNKRCRGCCIKYMIEKKSHICFLHLRDESRR---

---HIQSEHTEDFFKFLKENINSRESTSALLFNSDSIYNNTKQKTTERFNLTIEWLEELF
SPIPPPEVTDKKFFNKRKAMLLEFESKLSSLIDSFDENIDPVTSKYSVLENLLKESDTFH
KYYDSLSTSQNNEELKNIIQQYENEKNVHFEQRPLVITPYHPSTVSSNGKVPAFEFIESD
TT
Translated Amino Acid sequence (All Frames) 
Frame A:
nnfnynnn**hnnkhnnkh*hnnntqhnkqhwrnnnmqhnkqh*lnkqhwhnnkhnkql*
qhnkhnnkhnnnnnnnnnnyyynsvnnkkkqqqn*ktikhqvkiq*lvv*idhhhihqep
kkhnqknqqqvnnvwnvnqrnpikiviirdvedvvlni*lkrnhtfvsfifvmnldv---

---tysi*ty*rlf*isqrkykfkrinfcitf*f**yi**yktknnrki*fny*mvrrii
ftnsttrsyr*kvf**kksnviri*ikvkffn*ff**kyrsshfkifsfrefikri*yfp
*il**finfsk**rikkynsti*k*kkctf*tktfsnysissfnsffkwqsssi*iy*e*
yhl

Frame B:
ttsitttinstttstttsistttirsttssigatticsttssisstssigtttsttssfs
sttstttstttttttttttiittasttrrssskikkq*ntk*rfss*wfk*itttftknq
rstikrinsr*tmcgm*ikeiq*rl***em*rmly*iyd*keithlfpsss**i*t---

---HIQSEHTEDFFKFLKENINSRESTSALLFNSDSIYNNTKQKTTERFNLTIEWLEELF
SPIPPPEVTDKKFFNKRKAMLLEFESKLSSLIDSFDENIDPVTSKYSVLENLLKESDTFH
KYYDSLSTSQNNEELKNIIQQYENEKNVHFEQRPLVITPYHPSTVSSNGKVPAFEFIESD
TT

Frame C:
QLQLQQQLIAQQQAQQQALAQQQYAAQQAALAQQQYAAQQAALAQQAALAQQQAQQAALA
AQQAQQQAQQQQQQQQQQLLLQQRQQQEEAAAKLKNNKTPSKDSVVSGLNRSPPHSPRTK
EAQSKESTAGEQCVECKSKKSNKDCNNKRCRGCCIKYMIEKKSHICFLHLRDESRR---

---ifnlnilktflnfskki*iqenqllhyflilivyiiiqnkkqqkdli*llng*knyf
hqfhhqklqiksflikekqcy*nlnqs*vl*lillmki*iqslqniqf*riy*knlilsi
nimivyqllkimkn*ki*fnnmkmkkmyilnkdl**llhiilqqflqmakfqhlnllrvi
pp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD525 (CFD525Q) /CSM/CF/CFD5-B/CFD525Q.Seq.d/                       1572   0.0
CHR311 (CHR311Q) /CSM/CH/CHR3-A/CHR311Q.Seq.d/                       1021   0.0
CHM373 (CHM373Q) /CSM/CH/CHM3-D/CHM373Q.Seq.d/                       1021   0.0
CHF404 (CHF404Q) /CSM/CH/CHF4-A/CHF404Q.Seq.d/                       1021   0.0
AHL827 (AHL827Q) /CSM/AH/AHL8-B/AHL827Q.Seq.d/                       1021   0.0
AHL321 (AHL321Q) /CSM/AH/AHL3-A/AHL321Q.Seq.d/                       1021   0.0
AHK230 (AHK230Q) /CSM/AH/AHK2-B/AHK230Q.Seq.d/                       1021   0.0
AHI382 (AHI382Q) /CSM/AH/AHI3-D/AHI382Q.Seq.d/                       1021   0.0
AHI124 (AHI124Q) /CSM/AH/AHI1-A/AHI124Q.Seq.d/                       1021   0.0
CHE866 (CHE866Q) /CSM/CH/CHE8-C/CHE866Q.Seq.d/                       1015   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   583   0.0    11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   3e-11  17
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   2e-09  21
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   5e-09  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   7e-09  27
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           52   5e-08  23
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    38   1e-07  20
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   1e-07  20
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   1e-07  19
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    36   2e-07  16
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_24(AC116330|pid:none) Dictyostelium discoideum chromoso...   360   6e-98
CP001357_708(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    44   0.012
CP000792_1402(CP000792|pid:none) Campylobacter concisus 13826, c...    43   0.021
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    40   0.14
AE014185_166(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.23
EU959808_1(EU959808|pid:none) Zea mays clone 220083 SNARE domain...    39   0.30
AM910985_182(AM910985|pid:none) Plasmodium knowlesi strain H chr...    39   0.40
FM992689_551(FM992689|pid:none) Candida dubliniensis CD36 chromo...    39   0.40
BX571876_74(BX571876|pid:none) Leptospira biflexa temperate bact...    37   0.88
(P62135) RecName: Full=DNA double-strand break repair rad50 ATPa...    37   0.88
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal

>> prediction for CFD525 is mit
5' end seq. ID CFD525F
5' end seq. 
>CFD525F.Seq
AACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAAGCATTAG
CACAACAACAATACGCAGCACAACAAGCAGCATTGGCGCAACAACAATATGCAGCACAAC
AAGCAGCATTAGCTCAACAAGCAGCATTGGCACAACAACAAGCACAACAAGCAGCTTTAG
CAGCACAACAAGCACAACAACAAGCACAACAACAACAACAACAACAACAACAACAACTAT
TATTACAACAGCGTCAACAACAAGAAGAAGCAGCAGCAAAATTAAAAAACAATAAAACAC
CAAGTAAAGATTCAGTAGTTAGTGGTTTAAATAGATCACCACCACATTCACCAAGAACCA
AAGAAGCACAATCAAAAGAATCAACAGCAGGTGAACAATGTGTGGAATGTAAATCAAAGA
AATCCAATAAAGATTGTAATAATAAGAGATGTAGAGGATGTTGTATTAAATATATGATTG
AAAAGAAATCACACATTTGTTTCCTTCATCTTCGTGATGAATCTAGACGTC---------
-
Length of 5' end seq. 531
3' end seq. ID CFD525Z
3' end seq. 
>CFD525Z.Seq
----------ACATATTCAATCTGAACATACTGAAGACTTTTTTAAATTTCTCAAAGAAA
ATATAAATTCAAGAGAATCAACTTCTGCATTACTTTTTAATTCTGATAGTATATATAATA
ATACAAAACAAAAAACAACAGAAAGATTTAATTTAACTATTGAATGGTTAGAAGAATTAT
TTTCACCAATTCCACCACCAGAAGTTACAGATAAAAAGTTTTTTAATAAAAGAAAAGCAA
TGTTATTAGAATTTGAATCAAAGTTAAGTTCTTTAATTGATTCTTTTGATGAAAATATAG
ATCCAGTCACTTCAAAATATTCAGTTTTAGAGAATTTATTAAAAGAATCTGATACTTTCC
ATAAATATTATGATAGTTTATCAACTTCTCAAAATAATGAAGAATTAAAAAATATAATTC
AACAATATGAAAATGAAAAAAATGTACATTTTGAACAAAGACCTTTAGTAATTACTCCAT
ATCATCCTTCAACAGTTTCTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGTG
ATACCACCTT
Length of 3' end seq. 540
Connected seq. ID CFD525P
Connected seq. 
>CFD525P.Seq
AACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAAGCATTAG
CACAACAACAATACGCAGCACAACAAGCAGCATTGGCGCAACAACAATATGCAGCACAAC
AAGCAGCATTAGCTCAACAAGCAGCATTGGCACAACAACAAGCACAACAAGCAGCTTTAG
CAGCACAACAAGCACAACAACAAGCACAACAACAACAACAACAACAACAACAACAACTAT
TATTACAACAGCGTCAACAACAAGAAGAAGCAGCAGCAAAATTAAAAAACAATAAAACAC
CAAGTAAAGATTCAGTAGTTAGTGGTTTAAATAGATCACCACCACATTCACCAAGAACCA
AAGAAGCACAATCAAAAGAATCAACAGCAGGTGAACAATGTGTGGAATGTAAATCAAAGA
AATCCAATAAAGATTGTAATAATAAGAGATGTAGAGGATGTTGTATTAAATATATGATTG
AAAAGAAATCACACATTTGTTTCCTTCATCTTCGTGATGAATCTAGACGTC---------
-ACATATTCAATCTGAACATACTGAAGACTTTTTTAAATTTCTCAAAGAAAATATAAATT
CAAGAGAATCAACTTCTGCATTACTTTTTAATTCTGATAGTATATATAATAATACAAAAC
AAAAAACAACAGAAAGATTTAATTTAACTATTGAATGGTTAGAAGAATTATTTTCACCAA
TTCCACCACCAGAAGTTACAGATAAAAAGTTTTTTAATAAAAGAAAAGCAATGTTATTAG
AATTTGAATCAAAGTTAAGTTCTTTAATTGATTCTTTTGATGAAAATATAGATCCAGTCA
CTTCAAAATATTCAGTTTTAGAGAATTTATTAAAAGAATCTGATACTTTCCATAAATATT
ATGATAGTTTATCAACTTCTCAAAATAATGAAGAATTAAAAAATATAATTCAACAATATG
AAAATGAAAAAAATGTACATTTTGAACAAAGACCTTTAGTAATTACTCCATATCATCCTT
CAACAGTTTCTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGTGATACCACCT
T
Length of connected seq. 1071
Full length Seq ID -
Full length Seq. -
Length of full length seq. -