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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD509
Library CF
(Link to library)
Clone ID CFD509
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14185-1
Original site URL
Representative seq. ID CFD509Z
(Link to Original site)
Representative DNA sequence 
>CFD509 (CFD509Q) /CSM/CF/CFD5-A/CFD509Q.Seq.d/
XXXXXXXXXXCCNCCACAAGAACANCAACAACAACAAGANCANCCACAACAACCACAAGA
ACAACAACAACAACCAAATGTAGTTGATGAAGCCAAGAGACCAAAGGAACAACAACAACA
ACCACAACAACAACAACAAACGATTGATAAGAAAGGTTATAACAATAATAGAAGAGGTGG
TAGACACTATAGTTACAATAATAATTATAATAGCCATCATCATAGACATAATGGAATAAA
TAAAAATAGTTCTTGCAATGTATACATGATGAAAAAAGACACGAGGTTAAAACAGAACAA
ATAAATTAATAAAATAACCAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---PQEXQQQQXXPQQPQEQQQQPNVVDEAKRPKEQQQQPQQQQQTIDKKGYNNNRRGGR
HYSYNNNYNSHHHRHNGINKNSSCNVYMMKKDTRLKQNK*inkitk
Translated Amino Acid sequence (All Frames) 
Frame A:
---xhknxnnnkxxhnnhknnnnnqm*lmkprdqrnnnnnhnnnnkrlirkvitiieevv
dtivtiiiiiaiiidime*ikivlamyt**kktrg*nrtnklik*p


Frame B:
---xtrtxtttrxxttttrtttttkcs**sqetkgttttttttttnd**erl*q**krw*
tl*lq**l**pss*t*wnk*k*flqcihdekrhevkteqin**nnq


Frame C:
---PQEXQQQQXXPQQPQEQQQQPNVVDEAKRPKEQQQQPQQQQQTIDKKGYNNNRRGGR
HYSYNNNYNSHHHRHNGINKNSSCNVYMMKKDTRLKQNK*inkitk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD509 (CFD509Q) /CSM/CF/CFD5-A/CFD509Q.Seq.d/                        363   1e-99
AFM685 (AFM685Q) /CSM/AF/AFM6-D/AFM685Q.Seq.d/                        266   2e-70
CHC216 (CHC216Q) /CSM/CH/CHC2-A/CHC216Q.Seq.d/                        167   1e-40
CHB764 (CHB764Q) /CSM/CH/CHB7-C/CHB764Q.Seq.d/                        145   5e-34
CHB864 (CHB864Q) /CSM/CH/CHB8-C/CHB864Q.Seq.d/                        127   1e-28
CHQ250 (CHQ250Q) /CSM/CH/CHQ2-C/CHQ250Q.Seq.d/                         40   0.020
VSK383 (VSK383Q) /CSM/VS/VSK3-D/VSK383Q.Seq.d/                         38   0.078
VSK295 (VSK295Q) /CSM/VS/VSK2-D/VSK295Q.Seq.d/                         38   0.078
VSJ240 (VSJ240Q) /CSM/VS/VSJ2-B/VSJ240Q.Seq.d/                         38   0.078
VFN462 (VFN462Q) /CSM/VF/VFN4-C/VFN462Q.Seq.d/                         38   0.078
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.    40   8e-07  6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   6e-06  8
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38   7e-06  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   1e-05  10
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    32   2e-05  11
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38   3e-05  8
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36   3e-05  10
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   5e-05  9
AL034558|AL034558.3 Plasmodium falciparum MAL3P2.                  34   8e-05  8
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    34   8e-05  9
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000678_1266(CP000678|pid:none) Methanobrevibacter smithii ATCC...    33   3.9
protein update 2008.12.25
PSORT 

 psg: 0.75  gvh: 0.09  alm: 0.74  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.09
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for CFD509 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD509Z
3' end seq. 
>CFD509Z.Seq
----------CCNCCACAAGAACANCAACAACAACAAGANCANCCACAACAACCACAAGA
ACAACAACAACAACCAAATGTAGTTGATGAAGCCAAGAGACCAAAGGAACAACAACAACA
ACCACAACAACAACAACAAACGATTGATAAGAAAGGTTATAACAATAATAGAAGAGGTGG
TAGACACTATAGTTACAATAATAATTATAATAGCCATCATCATAGACATAATGGAATAAA
TAAAAATAGTTCTTGCAATGTATACATGATGAAAAAAGACACGAGGTTAAAACAGAACAA
ATAAATTAATAAAATAACCAAA
Length of 3' end seq. 312
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -