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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD492
Library CF
(Link to library)
Clone ID CFD492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID CFD492P
(Link to Original site)
Representative DNA sequence 
>CFD492 (CFD492Q) /CSM/CF/CFD4-D/CFD492Q.Seq.d/
AATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAA
CTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAG
TTCTTAATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATT
TATAATAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAG
CCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCA
TCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCA
CCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTG
TTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCA
CCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCA
GAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTXXXXXXXXXXTTTAATA
CCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTTTTGG
ATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAATTGG
AGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTACCAA
GATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAATCTCT
ACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACCATTCACCACAGTTCCCT
TGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAAGGTA
TTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGTCCAA
ATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGGTTCAAGAATTGATATTN
CCTGAAGGTTCAGAATTTGAAAATAAAGTAGTTAGTGGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nsnlyprsaqlfdcrrlsnelgavsfrvafsyeglrlfh*fli*fis*kfifiksivtli
ynnqivvlf*yff**IKMMKPDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTA
PNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTS
ELASKLAVLKLNGG---

---FNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQLEIAAGAAIEFFNNAR
GVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVPLVKLGDNFKKVSDYQ
ARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIVANHGSRIDIX*rfri*k*ss*w
Translated Amino Acid sequence (All Frames) 
Frame A:
nsnlyprsaqlfdcrrlsnelgavsfrvafsyeglrlfh*fli*fis*kfifiksivtli
ynnqivvlf*yff**IKMMKPDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTA
PNETVKNEFLNKEIPSINKLFTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTS
ELASKLAVLKLNGG---

---FNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQLEIAAGAAIEFFNNAR
GVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVPLVKLGDNFKKVSDYQ
ARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIVANHGSRIDIX*rfri*k*ss*w

Frame B:
iliyilvplnssivddyqmn*vl*ase*rsvtrg*gfsiss*fnsyhknlfl*nl**h*f
iiiklwsyfniffnklr**sqi*ivhyhnhhnfnhlevdhqilqpriyf*rnwkqshklh
qmkq*rmnf*tkkyhlstnclpvs*rierk*sigiksihhqliwf*tikiyqqslnkelq
nslqnwlf*n*mev---

---lipitfgsiskqwivf*nkifwmiwislsiqrllmvkisfnwrlllvlqlnsltmqe
vsmyqdqdfyq*nqplislsfnqisthsrrvfw**tridhspqfpwlnwvitlkrfqiik
lvskvfqifwnwinspflvi*plvqiwsskallslllimvqelixpegsefenkvvsg

Frame C:
f*fissfrstlrl*ttik*trccklpssvqlrgveafplvlnlihiikiyfykiysntnl
**sncglilifflin*ddearfk*sittitttsiiwk*iirscnrgfifeeigsnltnct
k*nske*ifkqrntiyqqivypflke*kesnrlg*nqstts*ygfkl*rftsnh*tknfr
trfkigcfeikwr---

---*yq*hlgqsqsngsyfetksfg*ygyhyqskgc*w*kyhsigdccwccn*il*qckr
cqctkikiftseinl*slyrsikslltregcfgneqe*tihhsslg*ig**l*kgfrlss
syqrysryfgigsthrfw*ynlwskygpqrhcyhcc*swfkn*yxlkvqnlkik*lvv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD492 (CFD492Q) /CSM/CF/CFD4-D/CFD492Q.Seq.d/                       2107   0.0
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                       1029   0.0
CHB571 (CHB571Q) /CSM/CH/CHB5-C/CHB571Q.Seq.d/                       1029   0.0
SFA512 (SFA512Q) /CSM/SF/SFA5-A/SFA512Q.Seq.d/                       1009   0.0
AFM828 (AFM828Q) /CSM/AF/AFM8-B/AFM828Q.Seq.d/                        997   0.0
AFI382 (AFI382Q) /CSM/AF/AFI3-D/AFI382Q.Seq.d/                        997   0.0
AFD135 (AFD135Q) /CSM/AF/AFD1-B/AFD135Q.Seq.d/                        987   0.0
SFC341 (SFC341Q) /CSM/SF/SFC3-B/SFC341Q.Seq.d/                        985   0.0
AFN895 (AFN895Q) /CSM/AF/AFN8-D/AFN895Q.Seq.d/                        985   0.0
AFD217 (AFD217Q) /CSM/AF/AFD2-A/AFD217Q.Seq.d/                        985   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.   963   0.0    4
L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.   250   8e-67  2
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   248   1e-61  1
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.          38   4e-09  4
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    38   4e-05  21
BQ089742|BQ089742.1 rc52d03.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    44   3e-04  2
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    34   3e-04  16
Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP; EC 2.7.7.9).    50   5e-04  3
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    46   8e-04  2
AX392735|AX392735.1 Sequence 25 from Patent WO0212526.             50   0.001  5
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   319   5e-88
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   211   3e-53
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   211   3e-53
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   211   3e-53
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   211   4e-53
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   211   4e-53
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   211   4e-53
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos...   209   1e-52
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   208   2e-52
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   208   2e-52
protein update 2009. 5.13
PSORT 

 psg: 0.76  gvh: 0.42  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFD492 is cyt
5' end seq. ID CFD492F
5' end seq. 
>CFD492F.Seq
AATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAA
CTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAG
TTCTTAATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATT
TATAATAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAG
CCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCA
TCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCA
CCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTG
TTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCA
CCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCA
GAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTT----------
Length of 5' end seq. 583
3' end seq. ID CFD492Z
3' end seq. 
>CFD492Z.Seq
----------TTTAATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTT
GAAACAAAATCTTTTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAA
AAATATCATTCAATTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAG
AGGTGTCAATGTACCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTAT
CGTTCAATCAAATCTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACC
ATTCACCACAGTTCCCTTGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCA
AGCTCGTATCAAAGGTATTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGA
TATAACCTTTGGTCCAAATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGG
TTCAAGAATTGATATTNCCTGAAGGTTCAGAATTTGAAAATAAAGTAGTTAGTGGTA
Length of 3' end seq. 527
Connected seq. ID CFD492P
Connected seq. 
>CFD492P.Seq
AATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAA
CTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAG
TTCTTAATTTAATTCATATCATAAAAATTTATTTTTATAAAATCTATAGTAACACTAATT
TATAATAATCAAATTGTGGTCTTATTTTAATATTTTTTTTAATAAATTAAGATGATGAAG
CCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAGTAGATCA
TCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACAAACTGCA
CCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAACAAATTG
TTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAATCCACCA
CCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAGAACTTCA
GAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTT----------TTTAATA
CCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTTTGAAACAAAATCTTTTGG
ATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTAAAAATATCATTCAATTGG
AGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAAGAGGTGTCAATGTACCAA
GATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTATCGTTCAATCAAATCTCT
ACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGACCATTCACCACAGTTCCCT
TGGTTAAATTGGGTGATAACTTTAAAAAGGTTTCAGATTATCAAGCTCGTATCAAAGGTA
TTCCAGATATTTTGGAATTGGATCAACTCACCGTTTCTGGTGATATAACCTTTGGTCCAA
ATATGGTCCTCAAAGGCACTGTTATCATTGTTGCTAATCATGGTTCAAGAATTGATATTN
CCTGAAGGTTCAGAATTTGAAAATAAAGTAGTTAGTGGTA
Length of connected seq. 1110
Full length Seq ID -
Full length Seq. -
Length of full length seq. -