CFD471
Library CF
(Link to library)
Clone ID CFD471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16241-1
Original site URL
Representative seq. ID CFD471P
(Link to Original site)
Representative DNA sequence
>CFD471 (CFD471Q) /CSM/CF/CFD4-C/CFD471Q.Seq.d/
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAATGTAAAGGATTGGATCAATGATGAAGXXXXXXXXXXCTTATCCAC
AATTGAAAAATCCATTCGATATCATTCTCACCAAATTGGCCCCATATTTCCCATTGGATT
ATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGTACTTTATCTGGTATCACTA
GAATTGGTATTAGATTTTTATGGATTAATATGTTTGAATTTGGATATCGTAAAACTTTCC
CACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGTAATTTATGTTTAAATATGC
AAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCTCAAGTCTATTTGAATGGTA
CTTCAGTTATACCATGTACAATTAATGCACCAACAGATCTTTGTATTATGTCAGAAATTG
GTCTTTTAACTTCACGTATTCAATTAGGTATTTCTTTCCTTTGGTATTGTATTTTATTAT
GGTACTTGGGTAATTGTTGCAACTTTTATTTTAGGTTTAGCTGTTTCAATATTTAAAAGA
AGACCATC
sequence update 2001. 6. 1
Translated Amino Acid sequence
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
ILFTIILLVVGAFVRPGSKPIDDQNVKDWINDE---

---YPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLWINMFEFG
YRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTDLC
IMSEIGLLTSRIQLGISFLWYCILLWYLGNCCNFYFRFSCFNI*kkti


Translated Amino Acid sequence (All Frames)
Frame A:
iaivsqnythhknkrdkknrknkk*kklyikflfiyk*nkskkknvshfsrvdsicrcss
hvnciklfys*illr*t*kwknynnhfsnwtyintfmcyayss*yfkcfnnvt**wytnf
tifnlskn*rc*nvilyiiwinfrsftnfsticifls*ri**kysnmfkslcrm*iynif
hivynyiigcwcic*tri*tnr*skckgldq**---

---lihn*kihsisfspnwphishwiisllvv*yfsfilvlylvslelvldfygliclnl
divklshkvyylhqcy*c*viyv*ickl*i*hqdmlcmvlksi*mvlqlyhvqlmhqqif
vlcqklvf*lhvfn*vflsfgivfyygtwvivatfilglavsifkrrp

Frame B:
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
ILFTIILLVVGAFVRPGSKPIDDQNVKDWINDE---

---lstieksiryhshqigpifpiglyhywwfnifhlflyfiwyh*nwy*ifmd*yv*iw
is*nfptrfitcisvinvk*fmfkyanckfstkicyvwcsslfewyfsytmyn*ctnrsl
yyvrnwsfnftysiryffplvlyfimvlg*llqllf*v*lfqylkedh

Frame C:
cncfpklhtpqk*kr*ekqkk*kikktlykiliyi*ikqk*kkecfpfq*gg*hlqvffs
r*lh*iil*lnitqinmkveklqqsfq*ldlh*hfyvlclfqlif*mfqqchivmvhkfh
hiqslkelkvlkcyiiyymdqf*efh*f*yhlhifimknmmkifqhvqefmqdvnlqyfs
yclqlyywllvhlldqdlnqsmikm*rigsmmk---

---YPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLWINMFEFG
YRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTDLC
IMSEIGLLTSRIQLGISFLWYCILLWYLGNCCNFYFRFSCFNI*kkti

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD471 (CFD471Q) /CSM/CF/CFD4-C/CFD471Q.Seq.d/ 1957 0.0
VFA118 (VFA118Q) /CSM/VF/VFA1-A/VFA118Q.Seq.d/ 1011 0.0
SFH228 (SFH228Q) /CSM/SF/SFH2-B/SFH228Q.Seq.d/ 1011 0.0
SFD558 (SFD558Q) /CSM/SF/SFD5-C/SFD558Q.Seq.d/ 1011 0.0
CHC568 (CHC568Q) /CSM/CH/CHC5-C/CHC568Q.Seq.d/ 1011 0.0
CHB356 (CHB356Q) /CSM/CH/CHB3-C/CHB356Q.Seq.d/ 1011 0.0
CFI671 (CFI671Q) /CSM/CF/CFI6-C/CFI671Q.Seq.d/ 1011 0.0
CFI285 (CFI285Q) /CSM/CF/CFI2-D/CFI285Q.Seq.d/ 1011 0.0
CFG150 (CFG150Q) /CSM/CF/CFG1-C/CFG150Q.Seq.d/ 1011 0.0
CFD267 (CFD267Q) /CSM/CF/CFD2-C/CFD267Q.Seq.d/ 1011 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 38 3e-08 25
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence. 34 8e-08 17
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 34 2e-07 16
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 36 3e-07 17
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 42 7e-07 22
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 34 1e-06 14
AR409405|AR409405.1 Sequence 1 from patent US 6632935. 38 2e-06 22
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 38 2e-06 22
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 34 5e-06 14
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 7e-06 17
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;... 312 1e-83
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter; 92 3e-17
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;... 84 1e-14
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ... 84 1e-14
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;... 83 2e-14
(Q3SYY9) RecName: Full=Probable lysosomal cobalamin transporter;... 82 3e-14
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;... 82 4e-14
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;... 79 4e-13
AY093598_1(AY093598|pid:none) Rattus norvegicus p53-related prot... 78 5e-13
(Q0VGV9) RecName: Full=Probable lysosomal cobalamin transporter;... 74 7e-12
protein update 2009. 5.13
PSORT

psg: 0.58 gvh: 0.58 alm: 0.11 top: 0.23 tms: 0.47 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: plasma membrane
32.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: Golgi

>> prediction for CFD471 is pla

5' end seq. ID CFD471F
5' end seq.
>CFD471F.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAATGTAAAGGATTGGATCAATGATGAAG----------
Length of 5' end seq. 641
3' end seq. ID CFD471Z
3' end seq.
>CFD471Z.Seq
----------CTTATCCACAATTGAAAAATCCATTCGATATCATTCTCACCAAATTGGCC
CCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGT
ACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATATGTTTGAATTT
GGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGT
AATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCT
CAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCACCAACAGATCTT
TGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTATTTCTTTCCTT
TGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTTTAGGTTTAGC
TGTTTCAATATTTAAAAGAAGACCATC
Length of 3' end seq. 497
Connected seq. ID CFD471P
Connected seq.
>CFD471P.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTGTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACC
AATCGATGATCAAAATGTAAAGGATTGGATCAATGATGAAG----------CTTATCCAC
AATTGAAAAATCCATTCGATATCATTCTCACCAAATTGGCCCCATATTTCCCATTGGATT
ATATCATTATTGGTGGTTTAATATTTTTCATTTATTCTTGTACTTTATCTGGTATCACTA
GAATTGGTATTAGATTTTTATGGATTAATATGTTTGAATTTGGATATCGTAAAACTTTCC
CACAAGGTTTATTACTTGCATCAGTGTTATTAATGTTAAGTAATTTATGTTTAAATATGC
AAATTGTAAATTTAGCACCAAGATATGTTATGTATGGTGCTCAAGTCTATTTGAATGGTA
CTTCAGTTATACCATGTACAATTAATGCACCAACAGATCTTTGTATTATGTCAGAAATTG
GTCTTTTAACTTCACGTATTCAATTAGGTATTTCTTTCCTTTGGTATTGTATTTTATTAT
GGTACTTGGGTAATTGTTGCAACTTTTATTTTAGGTTTAGCTGTTTCAATATTTAAAAGA
AGACCATC
Length of connected seq. 1138
Full length Seq ID -
Full length Seq. -
Length of full length seq. -