CFD459
Library CF
(Link to library)
Clone ID CFD459
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFD459F
(Link to Original site)
Representative DNA sequence
>CFD459 (CFD459Q) /CSM/CF/CFD4-C/CFD459Q.Seq.d/
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGCTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGGGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGXXXX
XXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCWDDLSCAKNTRTGEIFEIWSSCKPH--
-


Translated Amino Acid sequence (All Frames)
Frame A:
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCWDDLSCAKNTRTGEIFEIWSSCKPH--
-


Frame B:
fiqfcnykkrnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkviaqn
ihvnqievvhiyhlyhvvvrknfsvliviieivgmiyhvlktrelvkslrfgqvvnhi--
-


Frame C:
sfnfviikkgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*ksslri
ym*ir*klcifticimlw*eriflc*s*s*kllg*fimc*khenw*nl*dlvkl*tt---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD459 (CFD459Q) /CSM/CF/CFD4-C/CFD459Q.Seq.d/ 565 e-160
CFJ770 (CFJ770Q) /CSM/CF/CFJ7-C/CFJ770Q.Seq.d/ 557 e-158
SSA149 (SSA149Q) /CSM/SS/SSA1-C/SSA149Q.Seq.d/ 549 e-155
SLG851 (SLG851Q) /CSM/SL/SLG8-C/SLG851Q.Seq.d/ 549 e-155
SLB538 (SLB538Q) /CSM/SL/SLB5-B/SLB538Q.Seq.d/ 549 e-155
SLB120 (SLB120Q) /CSM/SL/SLB1-A/SLB120Q.Seq.d/ 549 e-155
SLA438 (SLA438Q) /CSM/SL/SLA4-B/SLA438Q.Seq.d/ 549 e-155
SLA432 (SLA432Q) /CSM/SL/SLA4-B/SLA432Q.Seq.d/ 549 e-155
SLA402 (SLA402Q) /CSM/SL/SLA4-A/SLA402Q.Seq.d/ 549 e-155
SHL109 (SHL109Q) /CSM/SH/SHL1-A/SHL109Q.Seq.d/ 549 e-155

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds. 375 e-146 3
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 32 0.027 7
AC084865|AC084865.3 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence. 48 0.085 1
AC079746|AC079746.2 Homo sapiens chromosome 7 clone CTD-2353O2, WORKING DRAFT SEQUENCE, 19 unordered pieces. 48 0.085 1
AC073320|AC073320.8 Homo sapiens BAC clone RP11-306G20 from 7, complete sequence. 48 0.085 1
AZ208391|AZ208391.1 SP_0150_A1_B06_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=150 Col=11 Row=C, DNA sequence. 48 0.085 1
AC145891|AC145891.1 Pan troglodytes chromosome UNK clone RP43-20A24, *** SEQUENCING IN PROGRESS ***, 63 unordered pieces. 48 0.085 1
BG603433|BG603433.1 EST502523 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDR54, mRNA sequence. 38 0.090 2
BG603400|BG603400.1 EST502490 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDR24, mRNA sequence. 38 0.099 2
AC145963|AC145963.3 Gallus gallus chromosome UNK# clone CH261-20A24, WORKING DRAFT SEQUENCE, 7 unordered pieces. 42 0.16 3
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 205 4e-52
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 201 5e-51
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 76 3e-13
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 54 2e-06
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 45 0.001
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 43 0.003
AM904678_1(AM904678|pid:none) Oncorhynchus mykiss partial mRNA f... 36 0.35
AB255883_1(AB255883|pid:none) Leucophaea maderae VgR mRNA for vi... 34 1.7
AM904679_1(AM904679|pid:none) Oncorhynchus mykiss pfc2 gene for ... 33 2.3
CP001185_1763(CP001185|pid:none) Thermosipho africanus TCF52B, c... 32 6.7
protein update 2009. 5.13
PSORT

psg: 0.96 gvh: 0.77 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.32 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: mitochondrial

>> prediction for CFD459 is exc

5' end seq. ID CFD459F
5' end seq.
>CFD459F.Seq
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGCTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGGGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAG----
------
Length of 5' end seq. 356
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -