>CFD456 (CFD456Q) /CSM/CF/CFD4-C/CFD456Q.Seq.d/
ATTATTAATAATTTAATTATTTGTATTATTATTCTATTACTTTTAATAATTTTAAATATA
ATATTTTTCAAATTATAATAAAAATGGATATTTATTATATTCTAAATCACGATAATTCAG
ACAATAATATTTTTGATTTTGAAAATAATAGTGATACTATTGATATTGGTAAAAATTATA
AAAAATGCAATGGCCAAGGTCAAATGTTACCACCACCTACATTAATAACACCATCCAATC
AAAATGATACAATAACTTATTATACCGATGGTCGTTCAATCTCTGTTCCAAGAAAGATGC
TAATTGATCCAAATACAATTGTAGACTGTGGCACCAATGGTATCATGTTTATTGCTTCTA
ATTTTGAAACTCAAAAAAGAGTAATTTTAAAAAAACTATCAAAAAGAATGTTTGATAATG
AATTAAATGGCCATAGAATTATTAGAAATTTAATTTTTCAAAATCTTTTCCAAGGTGGTA
AACATATTTCAACCTATCAAAGTATTTTTAAAAGAAAATGTTCAGATTCATATCAACCTC
CATTGACATCTATXXXXXXXXXX

y**FNYLYYYSITFNNFKYNIFQIIIKMDIYYILNHDNSDNNIFDFENNSDTIDIGKNYK
KCNGQGQMLPPPTLITPSNQNDTITYYTDGRSISVPRKMLIDPNTIVDCGTNGIMFIASN
FETQKRVILKKLSKRMFDNELNGHRIIRNLIFQNLFQGGKHISTYQSIFKRKCSDSYQPP
LTS---

Frame A:
iinnliiciiilllliilniiffkl**kwifiif*itiiqtiiflilkiivillilvkii
knamakvkcyhhlh**hhpikmiq*liipmvvqslfqerc*liqiql*tvapmvscllll
ilklkke*f*knyqkeclimn*maiellei*ffkifskvvnifqpikvflkenvqihinl
h*hl---


Frame B:
llii*lfvllfyyf**f*i*yfsnynkngyllysksr*frq*yf*f*k***yy*yw*kl*
kmqwprsnvtttyinntiqsk*ynnllyrwsfnlcskkdan*skyncrlwhqwyhvycf*
f*nskksnfkktikknv***ikwp*ny*kfnfsksfprw*tyfnlskyf*kkmfrfists
idi---


Frame C:
y**FNYLYYYSITFNNFKYNIFQIIIKMDIYYILNHDNSDNNIFDFENNSDTIDIGKNYK
KCNGQGQMLPPPTLITPSNQNDTITYYTDGRSISVPRKMLIDPNTIVDCGTNGIMFIASN
FETQKRVILKKLSKRMFDNELNGHRIIRNLIFQNLFQGGKHISTYQSIFKRKCSDSYQPP
LTS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD456 (CFD456Q) /CSM/CF/CFD4-C/CFD456Q.Seq.d/                        864   0.0
SFD667 (SFD667Q) /CSM/SF/SFD6-C/SFD667Q.Seq.d/                        856   0.0
SFB466 (SFB466Q) /CSM/SF/SFB4-C/SFB466Q.Seq.d/                        856   0.0
CFH683 (CFH683Q) /CSM/CF/CFH6-D/CFH683Q.Seq.d/                        856   0.0
AFN327 (AFN327Q) /CSM/AF/AFN3-B/AFN327Q.Seq.d/                        856   0.0
AFK882 (AFK882Q) /CSM/AF/AFK8-D/AFK882Q.Seq.d/                        829   0.0
AFH787 (AFH787Q) /CSM/AF/AFH7-D/AFH787Q.Seq.d/                        829   0.0
SFD855 (SFD855Q) /CSM/SF/SFD8-C/SFD855Q.Seq.d/                        771   0.0
AFN331 (AFN331Q) /CSM/AF/AFN3-B/AFN331Q.Seq.d/                        698   0.0
AFK680 (AFK680Q) /CSM/AF/AFK6-D/AFK680Q.Seq.d/                        694   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   3e-08  16
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    42   1e-06  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   3e-05  12
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   4e-05  11
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    42   1e-04  10
X70810|X70810.2 Euglena gracilis chloroplast complete genome.      32   3e-04  11
AC006756|AC006756.1 Caenorhabditis elegans clone Y40C7, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   3e-04  9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    30   3e-04  9
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32   4e-04  10
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   4e-04  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54V83) RecName: Full=Probable serine/threonine-protein kinase ...   119   7e-26
(Q54US6) RecName: Full=Probable inactive serine/threonine-protei...    84   2e-15
(P42525) RecName: Full=Extracellular signal-regulated kinase 1; ...    50   4e-05
U11077_1(U11077|pid:none) Dictyostelium discoideum extracellular...    47   3e-04
AL844508_281(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.45
AL034557_50(AL034557|pid:none) Plasmodium falciparum MAL4P1.           37   0.45
AL844503_49(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.45
CP000653_2079(CP000653|pid:none) Enterobacter sp. 638, complete ...    34   2.2
AM910990_206(AM910990|pid:none) Plasmodium knowlesi strain H chr...    34   2.9
AE014187_280(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.9

 psg: 0.85  gvh: 0.20  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFD456 is nuc

>CFD456F.Seq
ATTATTAATAATTTAATTATTTGTATTATTATTCTATTACTTTTAATAATTTTAAATATA
ATATTTTTCAAATTATAATAAAAATGGATATTTATTATATTCTAAATCACGATAATTCAG
ACAATAATATTTTTGATTTTGAAAATAATAGTGATACTATTGATATTGGTAAAAATTATA
AAAAATGCAATGGCCAAGGTCAAATGTTACCACCACCTACATTAATAACACCATCCAATC
AAAATGATACAATAACTTATTATACCGATGGTCGTTCAATCTCTGTTCCAAGAAAGATGC
TAATTGATCCAAATACAATTGTAGACTGTGGCACCAATGGTATCATGTTTATTGCTTCTA
ATTTTGAAACTCAAAAAAGAGTAATTTTAAAAAAACTATCAAAAAGAATGTTTGATAATG
AATTAAATGGCCATAGAATTATTAGAAATTTAATTTTTCAAAATCTTTTCCAAGGTGGTA
AACATATTTCAACCTATCAAAGTATTTTTAAAAGAAAATGTTCAGATTCATATCAACCTC
CATTGACATCTAT----------