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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD455
Library CF
(Link to library)
Clone ID CFD455
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11207-1|Contig-U15871-1
Original site URL
Representative seq. ID CFD455P
(Link to Original site)
Representative DNA sequence 
>CFD455 (CFD455Q) /CSM/CF/CFD4-C/CFD455Q.Seq.d/
AACAACAATAATACCAACAATAATAATCAAAGAGATCACAGTGGCAAAGATCATCACAGA
GAATACAAAGAGCATAGATCTAGTAATCACAAAGAGCACAGAGAGCGTCACAGAGAAAAT
AGAGAACATAGAGGTGATAGAGAAAACAGAGAAAATAGAGAAAACAGAGAAAATAGAGAA
CATAGAGAACATAGAGATAATAGACCAAACAGAGACAATAGAGAGTTTAGGGATTATAGT
TCAAATAGTAGTGGTAATAATAACAATAACAATATGATAAGTAATTTTAACAACATTAAC
AACAATAACAATAGCAATACAAACCTCAATAATATCAATAATGGTGGCGGTAAAAGATAT
GATCCAATGTCACTATCAAACCTCACTAATGATGATGAACCAAATCCACAACCAACTTTT
GTAACAAGACCCCAACAACAACCTCAACAACAACAACCTCAACAACAACAACAACCTCAA
CAACAACAACAACCTCAACAACAACAACAACAACCTCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAXXXXXXXXXXAAAAAAAAA
AAAAATTAATTNAATCATCAAATAAATCAAATTTTAAAGTAAAAAAAATAAAATGNCACT
CTTTTCATCAATNTCATCTATGTCAACCTCAATGTCTGGATCAAAATCAAGTATTGCATC
ATTTGGTAGTGGAACAAGTATGGGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NNNNTNNNNQRDHSGKDHHREYKEHRSSNHKEHRERHRENREHRGDRENRENRENRENRE
HREHRDNRPNRDNREFRDYSSNSSGNNNNNNMISNFNNINNNNNSNTNLNNINNGGGKRY
DPMSLSNLTNDDEPNPQPTFVTRPQQQPQQQQPQQQQQPQQQQQPQQQQQQPQQQQQQQQ
QQQQQQQQQQQQQ---

---KKKKLIXSSNKSNFKVKKIKXHSFHQXHLCQPQCLDQNQVLHHLVVEQVW
Translated Amino Acid sequence (All Frames) 
Frame A:
NNNNTNNNNQRDHSGKDHHREYKEHRSSNHKEHRERHRENREHRGDRENRENRENRENRE
HREHRDNRPNRDNREFRDYSSNSSGNNNNNNMISNFNNINNNNNSNTNLNNINNGGGKRY
DPMSLSNLTNDDEPNPQPTFVTRPQQQPQQQQPQQQQQPQQQQQPQQQQQQPQQQQQQQQ
QQQQQQQQQQQQQ---

---kkkkn*xnhqinqilk*kk*nxtlfinxiyvnlnvwikikyciiw*wnkyg

Frame B:
ttiiptiiikeitvakiitentksidlvitkstesvtekienieviektekiektekien
ienieiidqtetieslgiivqivvviititi**vilttlttitiaiqtsiisimvavkdm
iqchyqtslmmmnqihnqll*qdpnnnlnnnnlnnnnnlnnnnnlnnnnnnlnnnnnnnn
nnnnnnnnnnnnn---

---kkkkinxiik*ikf*skknkmxlfssxssmstsmsgskssiasfgsgtsmg

Frame C:
qq*yqq**skrsqwqrssqriqra*i**sqraqrasqrk*rt*r**rkqrk*rkqrk*rt
*rt*r**tkqrq*rv*gl*fk**w***q*qydk*f*qh*qq*q*qykpq*yq*wwr*ki*
snvtikph****tksttnfcnktptttsttttstttttstttttsttttttstttttttt
ttttttttttttt---

---KKKKLIXSSNKSNFKVKKIKXHSFHQXHLCQPQCLDQNQVLHHLVVEQVW
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD455 (CFD455Q) /CSM/CF/CFD4-C/CFD455Q.Seq.d/                        226   4e-58
SHJ568 (SHJ568Q) /CSM/SH/SHJ5-C/SHJ568Q.Seq.d/                        212   6e-54
SHF305 (SHF305Q) /CSM/SH/SHF3-A/SHF305Q.Seq.d/                        212   6e-54
CHO431 (CHO431Q) /CSM/CH/CHO4-B/CHO431Q.Seq.d/                        212   6e-54
CHN573 (CHN573Q) /CSM/CH/CHN5-D/CHN573Q.Seq.d/                        212   6e-54
CHK850 (CHK850Q) /CSM/CH/CHK8-C/CHK850Q.Seq.d/                        212   6e-54
CFK354 (CFK354Q) /CSM/CF/CFK3-C/CFK354Q.Seq.d/                        212   6e-54
CHF383 (CHF383Q) /CSM/CH/CHF3-D/CHF383Q.Seq.d/                        208   9e-53
SFI773 (SFI773Q) /CSM/SF/SFI7-D/SFI773Q.Seq.d/                        202   6e-51
CHF820 (CHF820Q) /CSM/CH/CHF8-A/CHF820Q.Seq.d/                        202   6e-51
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                  56   6e-15  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.001  10
BI701838|BI701838.1 sai20f12.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3744 5' similar to TR:O49743 O49743 HOMOLOGOUS TO GATA-BINDING TRANSCRIPTION FACTORS. ;, mRNA sequence.    54   0.003  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   0.011  2
G37999|G37999.2 C1M25 Plasmodium falciparum haploid Plasmodium falciparum STS genomic, sequence tagged site.    38   0.079  2
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    44   0.10   4
BX088559|BX088559.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-238P16.    46   0.10   4
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   0.11   5
BX571942|BX571942.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-240A24.    40   0.11   3
AC110962|AC110962.5 Rattus norvegicus clone CH230-309O21, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48   0.18   1
dna update 2004. 1.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 308,670,479
protein update 2009. 5.13
PSORT 

 psg: 0.40  gvh: -0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFD455 is nuc
5' end seq. ID CFD455F
5' end seq. 
>CFD455F.Seq
AACAACAATAATACCAACAATAATAATCAAAGAGATCACAGTGGCAAAGATCATCACAGA
GAATACAAAGAGCATAGATCTAGTAATCACAAAGAGCACAGAGAGCGTCACAGAGAAAAT
AGAGAACATAGAGGTGATAGAGAAAACAGAGAAAATAGAGAAAACAGAGAAAATAGAGAA
CATAGAGAACATAGAGATAATAGACCAAACAGAGACAATAGAGAGTTTAGGGATTATAGT
TCAAATAGTAGTGGTAATAATAACAATAACAATATGATAAGTAATTTTAACAACATTAAC
AACAATAACAATAGCAATACAAACCTCAATAATATCAATAATGGTGGCGGTAAAAGATAT
GATCCAATGTCACTATCAAACCTCACTAATGATGATGAACCAAATCCACAACCAACTTTT
GTAACAAGACCCCAACAACAACCTCAACAACAACAACCTCAACAACAACAACAACCTCAA
CAACAACAACAACCTCAACAACAACAACAACAACCTCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACA----------
Length of 5' end seq. 581
3' end seq. ID CFD455Z
3' end seq. 
>CFD455Z.Seq
----------AAAAAAAAAAAAAATTAATTNAATCATCAAATAAATCAAATTTTAAAGTA
AAAAAAATAAAATGNCACTCTTTTCATCAATNTCATCTATGTCAACCTCAATGTCTGGAT
CAAAATCAAGTATTGCATCATTTGGTAGTGGAACAAGTATGGGC
Length of 3' end seq. 154
Connected seq. ID CFD455P
Connected seq. 
>CFD455P.Seq
AACAACAATAATACCAACAATAATAATCAAAGAGATCACAGTGGCAAAGATCATCACAGA
GAATACAAAGAGCATAGATCTAGTAATCACAAAGAGCACAGAGAGCGTCACAGAGAAAAT
AGAGAACATAGAGGTGATAGAGAAAACAGAGAAAATAGAGAAAACAGAGAAAATAGAGAA
CATAGAGAACATAGAGATAATAGACCAAACAGAGACAATAGAGAGTTTAGGGATTATAGT
TCAAATAGTAGTGGTAATAATAACAATAACAATATGATAAGTAATTTTAACAACATTAAC
AACAATAACAATAGCAATACAAACCTCAATAATATCAATAATGGTGGCGGTAAAAGATAT
GATCCAATGTCACTATCAAACCTCACTAATGATGATGAACCAAATCCACAACCAACTTTT
GTAACAAGACCCCAACAACAACCTCAACAACAACAACCTCAACAACAACAACAACCTCAA
CAACAACAACAACCTCAACAACAACAACAACAACCTCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACA----------AAAAAAAAA
AAAAATTAATTNAATCATCAAATAAATCAAATTTTAAAGTAAAAAAAATAAAATGNCACT
CTTTTCATCAATNTCATCTATGTCAACCTCAATGTCTGGATCAAAATCAAGTATTGCATC
ATTTGGTAGTGGAACAAGTATGGGC
Length of connected seq. 735
Full length Seq ID -
Full length Seq. -
Length of full length seq. -