CFD444
Library CF
(Link to library)
Clone ID CFD444
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08208-1
Original site URL
Representative seq. ID CFD444Z
(Link to Original site)
Representative DNA sequence
>CFD444 (CFD444Q) /CSM/CF/CFD4-B/CFD444Q.Seq.d/
XXXXXXXXXXCACCGGTTTAAAACAATTCAATTTACCAGAAATTAATAATCAAAATTATA
TTTTCAGATTTGATGCAAAATATGTTGGTACTGATAATGAAAATAATAAATTAAAAGAAT
ATATTACAAATTGTTATGGTATGTCATTCTATGGTAGTGGTATTGGTAGTGGTGGTGGTG
GTGGTGGTAGTGGTAGTAGTAAATTATCATTCATATTAGAATCAAAAACCAAGAAATTCA
TATCCATTAGATTATATGGTATGAAAAATGAAAACATTGAAAATATAAATATTAATATTT
TCAATTGTGATGATAATAAACCACAACAATTGTTGGTTGATCAAGATACTATCAAACCTT
TAACATTACAATTATCAAATTATTTACCTTCAAATAATAATTTAAACTCAAATTTCGTTG
GTTTCACAAATACAAAAAAAATTAAATTAAACAATGTTAAAAATTTAATTGAATTTAATT
TTAATGGAAATGAAAATAAAAAATATTTCTTATACTTTATTGAAATTTTAGTAAGTTACA
AAAACATAAAAAAAAANAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---TGLKQFNLPEINNQNYIFRFDAKYVGTDNENNKLKEYITNCYGMSFYGSGIGSGGGG
GGSGSSKLSFILESKTKKFISIRLYGMKNENIENININIFNCDDNKPQQLLVDQDTIKPL
TLQLSNYLPSNNNLNSNFVGFTNTKKIKLNNVKNLIEFNFNGNENKKYFLYFIEILVSYK
NIKKXN


Translated Amino Acid sequence (All Frames)
Frame A:
---TGLKQFNLPEINNQNYIFRFDAKYVGTDNENNKLKEYITNCYGMSFYGSGIGSGGGG
GGSGSSKLSFILESKTKKFISIRLYGMKNENIENININIFNCDDNKPQQLLVDQDTIKPL
TLQLSNYLPSNNNLNSNFVGFTNTKKIKLNNVKNLIEFNFNGNENKKYFLYFIEILVSYK
NIKKXN


Frame B:
---pv*nnsiyqkliikiifsdlmqnmlvlimkiin*knilqivmvchsmvvvlvvvvvv
vvvvvvnyhsy*nqkprnsypldymv*kmktlki*ilifsivmiinhnncwlikilsnl*
hynyqiiylqiii*tqislvsqiqkkln*tmlki*lnlilmemkiknisytllkf**vtk
t*kkx


Frame C:
---rfktiqftrn**sklyfqi*ckicwy***k**ikriyykllwyvilw*wyw*wwwww
w*w***iiihiriknqeihih*iiwyek*kh*kyky*yfql****tttivg*sryyqtfn
itiiklftfk**fklkfrwfhkykkn*ikqc*kfn*i*f*wk*k*kiflily*nfsklqk
hkkkx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH845 (CFH845Q) /CSM/CF/CFH8-B/CFH845Q.Seq.d/ 474 e-133
CFD444 (CFD444Q) /CSM/CF/CFD4-B/CFD444Q.Seq.d/ 474 e-133
SSF282 (SSF282Q) /CSM/SS/SSF2-D/SSF282Q.Seq.d/ 42 0.009
SFK106 (SFK106Q) /CSM/SF/SFK1-A/SFK106Q.Seq.d/ 42 0.009
SSA618 (SSA618Q) /CSM/SS/SSA6-A/SSA618Q.Seq.d/ 40 0.035
VHA580 (VHA580Q) /CSM/VH/VHA5-D/VHA580Q.Seq.d/ 38 0.14
VFL884 (VFL884Q) /CSM/VF/VFL8-D/VFL884Q.Seq.d/ 38 0.14
SSH290 (SSH290Q) /CSM/SS/SSH2-D/SSH290Q.Seq.d/ 38 0.14
SHL382 (SHL382Q) /CSM/SH/SHL3-D/SHL382Q.Seq.d/ 36 0.55
SHG370 (SHG370Q) /CSM/SH/SHG3-C/SHG370Q.Seq.d/ 36 0.55

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 474 0.0 16
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 36 2e-12 13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-12 21
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 5e-11 19
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 7e-11 17
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 46 1e-10 15
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 44 5e-10 19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 36 8e-10 14
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 42 1e-09 14
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence. 36 1e-09 16
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_65(AC116305|pid:none) Dictyostelium discoideum chromoso... 229 3e-59
AJ493124_8(AJ493124|pid:none) Varroa destructor complete mitocho... 36 0.58
AY163547_8(AY163547|pid:none) Varroa destructor mitochondrion, c... 36 0.58

protein update 2008.12.25
PSORT

psg: 0.66 gvh: 0.37 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
12.0 %: mitochondrial

>> prediction for CFD444 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD444Z
3' end seq.
>CFD444Z.Seq
----------CACCGGTTTAAAACAATTCAATTTACCAGAAATTAATAATCAAAATTATA
TTTTCAGATTTGATGCAAAATATGTTGGTACTGATAATGAAAATAATAAATTAAAAGAAT
ATATTACAAATTGTTATGGTATGTCATTCTATGGTAGTGGTATTGGTAGTGGTGGTGGTG
GTGGTGGTAGTGGTAGTAGTAAATTATCATTCATATTAGAATCAAAAACCAAGAAATTCA
TATCCATTAGATTATATGGTATGAAAAATGAAAACATTGAAAATATAAATATTAATATTT
TCAATTGTGATGATAATAAACCACAACAATTGTTGGTTGATCAAGATACTATCAAACCTT
TAACATTACAATTATCAAATTATTTACCTTCAAATAATAATTTAAACTCAAATTTCGTTG
GTTTCACAAATACAAAAAAAATTAAATTAAACAATGTTAAAAATTTAATTGAATTTAATT
TTAATGGAAATGAAAATAAAAAATATTTCTTATACTTTATTGAAATTTTAGTAAGTTACA
AAAACATAAAAAAAAANAAT
Length of 3' end seq. 550
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -