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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD442
Library CF
(Link to library)
Clone ID CFD442
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16447-1
Original site URL
Representative seq. ID CFD442F
(Link to Original site)
Representative DNA sequence 
>CFD442 (CFD442Q) /CSM/CF/CFD4-B/CFD442Q.Seq.d/
AATTCAGCACAAACACTACTACCTAAAAAATGACACAACCAAATAACTATAAAATTGGAA
CCAACGTTATCCACGCTGGTCAATCCGCTGATAAAAATACAGGTGCTGTAATTGTACCAA
TTTCATTATCCACCACTTTCTTACAACCATCACCAGGTGTACTCCATTCTGAATATGATT
ATTCAAGATCAGGTAATCCAACAAGAAAAGCATTTGAAGAATGTATTGCAGCATGTGAAA
ATGCTAAATATGCATTATCATTTGCAAGTGGTTTAGCAACACTTACAACAATTACACATT
TATTAAAATCTGGTGATGAAGTTATTTCAATTGATGATGTTTATGGTGGTACACGTAGAT
ATTTTACACGTGTTGCAGCCAATTTCGATTTGAAATTCAGCTTTGTCGATCTTTCAACTT
TAGACGATTTAAAGAATGCATTCACCGATAAAACTAGATTAGTATGGATTGAAACACCAA
CCAACCCATTATTAAAAGTAGCTGATATTAAAGCAGTTGCAGATTACGTTCACAGTCGTG
GTGCTACTTTGGTTGTTGATAACACCTTTATGTCACCATACTTCCAAAATCCATTGGATT
TGGGTGCCGATATCGTTATGCACTCTGTCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fstnttt*KMTQPNNYKIGTNVIHAGQSADKNTGAVIVPISLSTTFLQPSPGVLHSEYDY
SRSGNPTRKAFEECIAACENAKYALSFASGLATLTTITHLLKSGDEVISIDDVYGGTRRY
FTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRLVWIETPTNPLLKVADIKAVADYVHSRG
ATLVVDNTFMSPYFQNPLDLGADIVMHS---
Translated Amino Acid sequence (All Frames) 
Frame A:
nsaqtllpkk*hnqitikleptlstlvnplikiqvl*lyqfhypplsynhhqvysilnmi
iqdqviqqekhlknvlqhvkmlnmhyhlqvv*qhlqqlhiy*nlvmklfqlmmfmvvhvd
ilhvlqpisi*nsalsifql*ti*rmhspikld*yglkhqpthy*k*lilkqlqitftvv
vllwllitplchhtskihwiwvpislctl---


Frame B:
iqhkhyylkndttk*l*nwnqryprwsir**kyrccnctnfiihhflttitrctpf*i*l
fkir*snkksi*rmycsm*kc*iciiickwfsntynnytfikiw**syfn**clwwyt*i
fytccsqfrfeiqlcrsfnfrrfkecihr*n*ismd*ntnqpiikss*y*sscrlrsqsw
cyfgc**hlyvtilpksigfgcryryalc---


Frame C:
fstnttt*KMTQPNNYKIGTNVIHAGQSADKNTGAVIVPISLSTTFLQPSPGVLHSEYDY
SRSGNPTRKAFEECIAACENAKYALSFASGLATLTTITHLLKSGDEVISIDDVYGGTRRY
FTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRLVWIETPTNPLLKVADIKAVADYVHSRG
ATLVVDNTFMSPYFQNPLDLGADIVMHS---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN370 (VFN370Q) /CSM/VF/VFN3-C/VFN370Q.Seq.d/                       1247   0.0
VFN269 (VFN269Q) /CSM/VF/VFN2-C/VFN269Q.Seq.d/                       1247   0.0
VFM592 (VFM592Q) /CSM/VF/VFM5-D/VFM592Q.Seq.d/                       1247   0.0
VFH435 (VFH435Q) /CSM/VF/VFH4-B/VFH435Q.Seq.d/                       1247   0.0
VFC860 (VFC860Q) /CSM/VF/VFC8-C/VFC860Q.Seq.d/                       1247   0.0
VFB688 (VFB688Q) /CSM/VF/VFB6-D/VFB688Q.Seq.d/                       1247   0.0
SFG355 (SFG355Q) /CSM/SF/SFG3-C/SFG355Q.Seq.d/                       1247   0.0
CHB141 (CHB141Q) /CSM/CH/CHB1-B/CHB141Q.Seq.d/                       1247   0.0
CFK279 (CFK279Q) /CSM/CF/CFK2-D/CFK279Q.Seq.d/                       1247   0.0
CFD442 (CFD442Q) /CSM/CF/CFD4-B/CFD442Q.Seq.d/                       1247   0.0
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U68249|U68249.1 Dictyostelium discoideum CysA (cysA) mRNA, partial cds.   484   e-133  1
BM393935|BM393935.1 50072-2-12-A04.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM392708|BM392708.1 50071-2-12-A04.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM393905|BM393905.1 50072-2-11-G12.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM392692|BM392692.1 50071-2-11-G12.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM396827|BM396827.1 5009-0-25-F02.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM400036|BM400036.1 5009-0-65-B07.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   1e-05  3
BM398901|BM398901.1 5009-0-50-C11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   2e-05  3
BM400277|BM400277.1 5009-0-70-C06.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   2e-05  3
BM401177|BM401177.1 5009-0-83-F10.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    42   4e-04  2
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DV9) RecName: Full=Cystathionine gamma-lyase;          EC=4....   401   e-111
(Q60HG7) RecName: Full=Cystathionine gamma-lyase;          EC=4....   226   5e-58
AK223376_1(AK223376|pid:none) Homo sapiens mRNA for cystathionas...   223   5e-57
AY891603_1(AY891603|pid:none) Synthetic construct Homo sapiens c...   223   5e-57
(P32929) RecName: Full=Cystathionine gamma-lyase;          EC=4....   223   5e-57
(Q58DW2) RecName: Full=Cystathionine gamma-lyase;          EC=4....   220   2e-56
BC151523_1(BC151523|pid:none) Bos taurus cystathionase (cystathi...   220   2e-56
(Q19QT7) RecName: Full=Cystathionine gamma-lyase;          EC=4....   219   4e-56
(Q8VCN5) RecName: Full=Cystathionine gamma-lyase;          EC=4....   219   5e-56
BX842656_199(BX842656|pid:none) Bdellovibrio bacteriovorus compl...   216   3e-55
protein update 2009. 5.13
PSORT 

 psg: 0.80  gvh: 0.54  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFD442 is cyt
5' end seq. ID CFD442F
5' end seq. 
>CFD442F.Seq
AATTCAGCACAAACACTACTACCTAAAAAATGACACAACCAAATAACTATAAAATTGGAA
CCAACGTTATCCACGCTGGTCAATCCGCTGATAAAAATACAGGTGCTGTAATTGTACCAA
TTTCATTATCCACCACTTTCTTACAACCATCACCAGGTGTACTCCATTCTGAATATGATT
ATTCAAGATCAGGTAATCCAACAAGAAAAGCATTTGAAGAATGTATTGCAGCATGTGAAA
ATGCTAAATATGCATTATCATTTGCAAGTGGTTTAGCAACACTTACAACAATTACACATT
TATTAAAATCTGGTGATGAAGTTATTTCAATTGATGATGTTTATGGTGGTACACGTAGAT
ATTTTACACGTGTTGCAGCCAATTTCGATTTGAAATTCAGCTTTGTCGATCTTTCAACTT
TAGACGATTTAAAGAATGCATTCACCGATAAAACTAGATTAGTATGGATTGAAACACCAA
CCAACCCATTATTAAAAGTAGCTGATATTAAAGCAGTTGCAGATTACGTTCACAGTCGTG
GTGCTACTTTGGTTGTTGATAACACCTTTATGTCACCATACTTCCAAAATCCATTGGATT
TGGGTGCCGATATCGTTATGCACTCTGTC----------
Length of 5' end seq. 629
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -