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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD440
Library CF
(Link to library)
Clone ID CFD440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10797-1
Original site URL
Representative seq. ID CFD440P
(Link to Original site)
Representative DNA sequence 
>CFD440 (CFD440Q) /CSM/CF/CFD4-B/CFD440Q.Seq.d/
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACTACTAGAAATGTAAGTGTCGACAATTTGGGTTTGCTTAAAACTTATG
AATGGAATGATGGTGAATTCGTTATAGAGGTTATTGATAGTGCAGATGXXXXXXXXXXAA
ATTGACACTGCTCCAGCNGAAGCAATGATGAAACATGTTTCTCAACAAATTGAATCCAAA
CAATTGATTGGTAAGAAATTCACTGGTATCTCTGATTCTTTGGAATATGAAATTGCATCT
TGTGATGATTTTGAATATAAAGATCCAATTGATAGTTCAGTTTCCTCTCATCAAGGTCTT
CGTATCATTTTCACTGATGGCTCAAGAATTATCTATCGTTTAAGTGGTACTGGTTCAACT
GGTGCCACAGTTCGTGTTTATTTCGATAAATATGAAACTCAACCTACTCAATTAAATAAT
GATGTTCAAACTCATCTTAAATCTTTAATTCATATTGCACTTGTTGAAATTTCAAAATTA
AATCATTATACTGGTAGAAATGAACCAAATGTAATTACATAAATAAATAAATTTTAATAA
ACAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
flfynhcinknlyiyi*NLNKDMFKQTFKVNIIPTQPFEGQKPGTSGLRKKVTEVMKTNY
LGNFVQSIFNALPEDKLKGSTIVVGGDGRYYNNDAIQLIFQIAAANGVGKILVGRYGLLS
TPAISAIVRARSALGAIILTASHNPGGPNGDFGIKYNMSNGGPAPESITNAIYKHTTSIT
QIKTTRNVSVDNLGLLKTYEWNDGEFVIEVIDSAD---

---IDTAPAEAMMKHVSQQIESKQLIGKKFTGISDSLEYEIASCDDFEYKDPIDSSVSSH
QGLRIIFTDGSRIIYRLSGTGSTGATVRVYFDKYETQPTQLNNDVQTHLKSLIHIALVEI
SKLNHYTGRNEPNVIT*inkf**tkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyfiitv*tkiyiyiyri*ikicsnkhlk*ilyrpnhlkvknqvhlv*ekk*lk**rqi
tlvtlfnqfsmlyqkin*kdqllllvvmvvttimmlfn*ffklqqpmelerf**edmvyf
qhqqslqsfvlvqhwvqsf*qhhiiqvvqmvilvlniicpmvvqlqnqspmqsiniphqs
hklrllem*vstiwvclklmngmmvnsl*rllivqm---

---kltllqxkq**nmflnklnpnn*lvrnslvslilwnmklhlvmilnikiqlivqfpl
ikvfvsfslmaqelsiv*vvlvqlvpqfvfisinmklnlln*immfklilnl*filhllk
fqn*iiilvemnqm*lhk*infnkqk

Frame B:
ffil*slykqkfiyiyiefk*ryvqtni*skyytdpti*rsktryiwfkkksn*snedkl
pw*lcsinfqcftrr*ikrinyccww*wsllq**cysinfsncssqwswkdfsrkiwftf
ntsnlcnrscsfsigcnhfnsit*srwskw*fwy*i*yvqwwsssrinhqcnl*tyhinh
tn*dy*kckcrqfgfa*nl*me*w*iryrgy**cr---

---n*hcssxsndetcfstn*iqtidw*eihwyl*ffgi*ncil**f*i*rsn**fsfls
srssyhfh*wlknylsfkwywfnwchssclfr*i*nstysik**csnss*ifnsyctc*n
fkikslyw*k*tkcnyink*ilinkk

Frame C:
flfynhcinknlyiyi*NLNKDMFKQTFKVNIIPTQPFEGQKPGTSGLRKKVTEVMKTNY
LGNFVQSIFNALPEDKLKGSTIVVGGDGRYYNNDAIQLIFQIAAANGVGKILVGRYGLLS
TPAISAIVRARSALGAIILTASHNPGGPNGDFGIKYNMSNGGPAPESITNAIYKHTTSIT
QIKTTRNVSVDNLGLLKTYEWNDGEFVIEVIDSAD---

---IDTAPAEAMMKHVSQQIESKQLIGKKFTGISDSLEYEIASCDDFEYKDPIDSSVSSH
QGLRIIFTDGSRIIYRLSGTGSTGATVRVYFDKYETQPTQLNNDVQTHLKSLIHIALVEI
SKLNHYTGRNEPNVIT*inkf**tkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD440 (CFD440Q) /CSM/CF/CFD4-B/CFD440Q.Seq.d/                       1935   0.0
AFO365 (AFO365Q) /CSM/AF/AFO3-C/AFO365Q.Seq.d/                       1134   0.0
VFL192 (VFL192Q) /CSM/VF/VFL1-D/VFL192Q.Seq.d/                       1126   0.0
VFL815 (VFL815Q) /CSM/VF/VFL8-A/VFL815Q.Seq.d/                       1106   0.0
AFO149 (AFO149Q) /CSM/AF/AFO1-C/AFO149Q.Seq.d/                       1084   0.0
AFM194 (AFM194Q) /CSM/AF/AFM1-D/AFM194Q.Seq.d/                       1084   0.0
VFK693 (VFK693Q) /CSM/VF/VFK6-D/VFK693Q.Seq.d/                       1076   0.0
VHK768 (VHK768Q) /CSM/VH/VHK7-C/VHK768Q.Seq.d/                       1070   0.0
AFM220 (AFM220Q) /CSM/AF/AFM2-A/AFM220Q.Seq.d/                       1070   0.0
AFD325 (AFD325Q) /CSM/AF/AFD3-B/AFD325Q.Seq.d/                       1068   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61984|U61984.1 Dictyostelium discoideum phosphoglucomutase A (pgmA) mRNA, complete cds.   977   0.0    2
AL429584|AL429584.1 clone BA0AB032E07 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    50   5e-10  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   3e-08  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   5e-08  20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   4e-07  20
U09499|U09499.1 Saccharomyces cerevisiae phosphoglucomutase (GAL5) gene, complete cds.    48   2e-06  2
X74823|X74823.1 S.cerevisiae gene for phosphoglucomutase.          48   2e-06  2
CA546232|CA546232.1 K0128B04-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1-) cDNA Library (Long) Mus musculus cDNA clone NIA:K0128B04 IMAGE:30042063 5', mRNA sequence.    64   4e-06  1
AY411353|AY411353.1 Mus musculus PGM1 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence.    64   4e-06  1
CA545775|CA545775.1 K0120F10-5N NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit+/Sca-1-) cDNA Library (Long) Mus musculus cDNA clone NIA:K0120F10 IMAGE:30041349 5', mRNA sequence.    64   4e-06  1
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23919) RecName: Full=Phosphoglucomutase-1;          Short=PGM ...   385   e-105
AY059926_1(AY059926|pid:none) Arabidopsis thaliana phosphoglucom...   217   6e-55
(Q9SGC1) RecName: Full=Probable phosphoglucomutase, cytoplasmic ...   216   8e-55
AK064893_1(AK064893|pid:none) Oryza sativa Japonica Group cDNA c...   215   2e-54
(P93262) RecName: Full=Phosphoglucomutase, cytoplasmic;         ...   214   4e-54
(Q9M4G4) RecName: Full=Phosphoglucomutase, cytoplasmic;         ...   214   5e-54
(Q9SM60) RecName: Full=Phosphoglucomutase, cytoplasmic;         ...   212   2e-53
AJ313311_1(AJ313311|pid:none) Triticum aestivum partial mRNA for...   211   3e-53
AC082645_17(AC082645|pid:none) Oryza sativa chromosome 3 BAC OSJ...   211   3e-53
AY479974_1(AY479974|pid:none) Populus tomentosa cytosolic phosph...   211   5e-53
protein update 2009. 5.13
PSORT 

 psg: 0.71  gvh: 0.44  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFD440 is cyt
5' end seq. ID CFD440F
5' end seq. 
>CFD440F.Seq
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACTACTAGAAATGTAAGTGTCGACAATTTGGGTTTGCTTAAAACTTATG
AATGGAATGATGGTGAATTCGTTATAGAGGTTATTGATAGTGCAGATG----------
Length of 5' end seq. 648
3' end seq. ID CFD440Z
3' end seq. 
>CFD440Z.Seq
----------AAATTGACACTGCTCCAGCNGAAGCAATGATGAAACATGTTTCTCAACAA
ATTGAATCCAAACAATTGATTGGTAAGAAATTCACTGGTATCTCTGATTCTTTGGAATAT
GAAATTGCATCTTGTGATGATTTTGAATATAAAGATCCAATTGATAGTTCAGTTTCCTCT
CATCAAGGTCTTCGTATCATTTTCACTGATGGCTCAAGAATTATCTATCGTTTAAGTGGT
ACTGGTTCAACTGGTGCCACAGTTCGTGTTTATTTCGATAAATATGAAACTCAACCTACT
CAATTAAATAATGATGTTCAAACTCATCTTAAATCTTTAATTCATATTGCACTTGTTGAA
ATTTCAAAATTAAATCATTATACTGGTAGAAATGAACCAAATGTAATTACATAAATAAAT
AAATTTTAATAAACAAAAAAA
Length of 3' end seq. 431
Connected seq. ID CFD440P
Connected seq. 
>CFD440P.Seq
ATTTTTTATTTTATAATCACTGTATAAACAAAAATTTATATATATATATATAGAATTTAA
ATAAAGATATGTTCAAACAAACATTTAAAGTAAATATTATACCGACCCAACCATTTGAAG
GTCAAAAACCAGGTACATCTGGTTTAAGAAAAAAAGTAACTGAAGTAATGAAGACAAATT
ACCTTGGTAACTTTGTTCAATCAATTTTCAATGCTTTACCAGAAGATAAATTAAAAGGAT
CAACTATTGTTGTTGGTGGTGATGGTCGTTACTACAATAATGATGCTATTCAATTAATTT
TTCAAATTGCAGCAGCCAATGGAGTTGGAAAGATTTTAGTAGGAAGATATGGTTTACTTT
CAACACCAGCAATCTCTGCAATCGTTCGTGCTCGTTCAGCATTGGGTGCAATCATTTTAA
CAGCATCACATAATCCAGGTGGTCCAAATGGTGATTTTGGTATTAAATATAATATGTCCA
ATGGTGGTCCAGCTCCAGAATCAATCACCAATGCAATCTATAAACATACCACATCAATCA
CACAAATTAAGACTACTAGAAATGTAAGTGTCGACAATTTGGGTTTGCTTAAAACTTATG
AATGGAATGATGGTGAATTCGTTATAGAGGTTATTGATAGTGCAGATG----------AA
ATTGACACTGCTCCAGCNGAAGCAATGATGAAACATGTTTCTCAACAAATTGAATCCAAA
CAATTGATTGGTAAGAAATTCACTGGTATCTCTGATTCTTTGGAATATGAAATTGCATCT
TGTGATGATTTTGAATATAAAGATCCAATTGATAGTTCAGTTTCCTCTCATCAAGGTCTT
CGTATCATTTTCACTGATGGCTCAAGAATTATCTATCGTTTAAGTGGTACTGGTTCAACT
GGTGCCACAGTTCGTGTTTATTTCGATAAATATGAAACTCAACCTACTCAATTAAATAAT
GATGTTCAAACTCATCTTAAATCTTTAATTCATATTGCACTTGTTGAAATTTCAAAATTA
AATCATTATACTGGTAGAAATGAACCAAATGTAATTACATAAATAAATAAATTTTAATAA
ACAAAAAAA
Length of connected seq. 1079
Full length Seq ID -
Full length Seq. -
Length of full length seq. -