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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD434
Library CF
(Link to library)
Clone ID CFD434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFD434E
(Link to Original site)
Representative DNA sequence 
>CFD434 (CFD434Q) /CSM/CF/CFD4-B/CFD434Q.Seq.d/
GACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAA
TAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAA
CAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACC
CAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAG
CTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACAC
CAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCA
GTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAA
ATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTA
TTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAG
AACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATG
AAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAG
AGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTG
ATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTT
CACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAA
TTCAAACTGAAACCTCTCAAGCAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTT
CAAATGATACTGAATTACAACAACNTCAACAACAACAACAACAACANCCAGAACAACCAG
AACAACAC
sequence update 2001. 6. 9
Translated Amino Acid sequence 
qqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVSDFFSFCGRIVNLFLRNDP
TGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPELEFDLTQQFSQQQQFNNLS
GEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASIIAAGYSVGQDAAIKARQVDEE
HMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVERANALDERFQISGFFKSASD
MISQQASNLMKAAEENSTVSPIVNKVSSFGTFIKQEVQQIQTETSQAIDEKNKEKGINSS
NDTELQQXQQQQQQXPEQPEQH
Translated Amino Acid sequence (All Frames) 
Frame A:
dnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilkqfqifshfveelliyf*emt
qlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlhqn*sli*hnnflnnnnliis
vvnnnhnnnnmlvnhkktl*ienivcqimkevkplllhqllqqvivldktlplkhvklmk
ni*fh*nlklelklskqkqmkliitftflrvplplrvql*reqmhsmkdsksqvslrvqv
i*slnklpi**kqpkkivqfhqs*ikfqvlvlllnkkfnkfklkplkqlmkkikkkvltl
qmilnynnxnnnnnnxqnnqnn


Frame B:
tttititttthsliyi*i*nnesrfhslcfkyfiesky*nsfrfflilwknc*fifkk*p
nw*fttsnssi*irfscknsfiinkcincr*snsscsiytrirv*fnttifsttti**sq
w*tttttttic*sttrrhck*rt*car**kk*nlcccinycsrl*cwtrrch*stss**r
tydfikt*sws*scqsksk*n***pshf*ecrch*gcscreskctr*kipnlrfl*eck*
ydlstsfqfnessrrk*ysftnrk*sfkfwyfy*trsstnsn*nlssn**kk*rkry*lf
k*y*itttsttttttxrttrtt


Frame C:
qqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVSDFFSFCGRIVNLFLRNDP
TGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPELEFDLTQQFSQQQQFNNLS
GEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASIIAAGYSVGQDAAIKARQVDEE
HMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVERANALDERFQISGFFKSASD
MISQQASNLMKAAEENSTVSPIVNKVSSFGTFIKQEVQQIQTETSQAIDEKNKEKGINSS
NDTELQQXQQQQQQXPEQPEQH
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/                       1003   0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/                       1003   0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                       1003   0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/                       1003   0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/                       1003   0.0
CFK424 (CFK424Q) /CSM/CF/CFK4-A/CFK424Q.Seq.d/                       1003   0.0
CFD434 (CFD434Q) /CSM/CF/CFD4-B/CFD434Q.Seq.d/                       1003   0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        995   0.0
CHB354 (CHB354Q) /CSM/CH/CHB3-C/CHB354Q.Seq.d/                        995   0.0
CFJ578 (CFJ578Q) /CSM/CF/CFJ5-D/CFJ578Q.Seq.d/                        995   0.0
own update 2002. 9.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    38   1e-04  10
AC053544|AC053544.5 Homo sapiens chromosome 4 clone RP11-793B9, complete sequence.    42   2e-04  10
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    38   5e-04  16
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   0.002  17
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40   0.002  13
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36   0.004  14
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    34   0.004  14
AC011709|AC011709.11 Homo sapiens chromosome 18, clone RP11-500H12, complete sequence.    32   0.009  12
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   0.012  12
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    34   0.014  12
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ...    71   6e-11
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM...    67   7e-10
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c...    67   7e-10
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m...    67   7e-10
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g...    67   7e-10
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM...    67   7e-10
AC183492_7(AC183492|pid:none) Brassica oleracea Contig G, comple...    66   2e-09
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM...    65   3e-09
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen...    65   3e-09
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit...    65   3e-09
protein update 2009. 6.30
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for CFD434 is cyt
5' end seq. ID CFD434F
5' end seq. 
>CFD434F.Seq
GACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAA
TAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAA
CAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACC
CAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAG
CTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACAC
CAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCA
GTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAA
ATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTA
TTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAG
AACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATG
AAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTG----------
Length of 5' end seq. 639
3' end seq. ID CFD434Z
3' end seq. 
>CFD434Z.Seq
----------TGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTA
AAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAG
CTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTG
CCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAG
GTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAG
CCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTA
TTAAACAAGAAGTTCAACAAATTCAAACTGAAACCTCTCAAGCAATTGATGAAAAAAATA
AAGAAAAAGGTATTAACTCTTCAAATGATACTGAATTACAACAACNTCAACAACAACAAC
AACAACANCCAGAACAACCAGAACAACAC
Length of 3' end seq. 499
Connected seq. ID CFD434P
Connected seq. 
>CFD434P.Seq
GACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAA
TAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAA
CAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACC
CAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAG
CTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACAC
CAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCA
GTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAA
ATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTA
TTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAG
AACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATG
AAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTG----------TGCATCAATTA
TTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAG
AACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATG
AAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAG
AGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTG
ATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTT
CACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAA
TTCAAACTGAAACCTCTCAAGCAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTT
CAAATGATACTGAATTACAACAACNTCAACAACAACAACAACAACANCCAGAACAACCAG
AACAACAC
Length of connected seq. 1138
Full length Seq ID CFD434E
Full length Seq. 
>CFD434E.Seq
GACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAA
TAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAA
CAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACC
CAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAG
CTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACAC
CAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCA
GTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAA
ATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTA
TTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAG
AACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATG
AAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAG
AGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTG
ATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTT
CACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAAACAAGAAGTTCAACAAA
TTCAAACTGAAACCTCTCAAGCAATTGATGAAAAAAATAAAGAAAAAGGTATTAACTCTT
CAAATGATACTGAATTACAACAACNTCAACAACAACAACAACAACANCCAGAACAACCAG
AACAACAC
Length of full length seq. 968