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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD433
Library CF
(Link to library)
Clone ID CFD433
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14183-1
Original site URL
Representative seq. ID CFD433Z
(Link to Original site)
Representative DNA sequence 
>CFD433 (CFD433Q) /CSM/CF/CFD4-B/CFD433Q.Seq.d/
XXXXXXXXXXTGAAGAATTATCAGGAAATGATTTGAAAATTGTTGAAAAGGTAAATAAAA
TATCCAATGGATGAATCAAATGATTTAACATTTTGTTTTGGTTATTTTCATTTAATTGAA
AAATCAATTGGTTTATTTTCAATGGATGAAAAAAAGAAATTCACACCAAATGAATCTGTT
ATATCAGAGAATTTCATTCACTGTTTTAGAGATATTAATAATAATTTAGTTGATATACCA
AATATTCATATATCAAAAGATTTATCCTGAAGTTTTATCTTCAATTGATTTTAAAAATTT
TAAACCATATCAATTAATTACAAATCAAGATTTAAATAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---knyqemi*kllkr*IKYPMDESNDLTFCFGYFHLIEKSIGLFSMDEKKKFTPNESVI
SENFIHCFRDINNNLVDIPNIHISKDLS*sfifn*f*kf*tisinyksrfk*
Translated Amino Acid sequence (All Frames) 
Frame A:
---eelsgndlkivekvnkisng*ik*fnilfwlfsfn*kinwfifng*kkeihtk*icy
irefhslf*ry***fs*ytkysyikrfilkfylqlilkilnhin*lqiki*i


Frame B:
---knyqemi*kllkr*IKYPMDESNDLTFCFGYFHLIEKSIGLFSMDEKKKFTPNESVI
SENFIHCFRDINNNLVDIPNIHISKDLS*sfifn*f*kf*tisinyksrfk*


Frame C:
---riirk*fenc*kgk*niqwmnqmi*hfvlvifi*lknqlvyfqwmkkrnshqmnlly
qrisftvleiliii*liyqifiyqkiypevlssidfknfkpyqlitnqdln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD433 (CFD433Q) /CSM/CF/CFD4-B/CFD433Q.Seq.d/                        611   e-174
SSI152 (SSI152Q) /CSM/SS/SSI1-C/SSI152Q.Seq.d/                        579   e-164
SFD889 (SFD889Q) /CSM/SF/SFD8-D/SFD889Q.Seq.d/                        575   e-163
CHB422 (CHB422Q) /CSM/CH/CHB4-A/CHB422Q.Seq.d/                        565   e-160
SFI259 (SFI259Q) /CSM/SF/SFI2-C/SFI259Q.Seq.d/                        543   e-154
CFJ103 (CFJ103Q) /CSM/CF/CFJ1-A/CFJ103Q.Seq.d/                        480   e-135
SLE786 (SLE786Q) /CSM/SL/SLE7-D/SLE786Q.Seq.d/                         38   0.082
SHH616 (SHH616Q) /CSM/SH/SHH6-A/SHH616Q.Seq.d/                         38   0.082
VSK341 (VSK341Q) /CSM/VS/VSK3-B/VSK341Q.Seq.d/                         36   0.33
VSA737 (VSA737Q) /CSM/VS/VSA7-B/VSA737Q.Seq.d/                         36   0.33
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-09  17
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36   6e-09  12
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   2e-08  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-08  16
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    34   4e-08  16
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    34   1e-07  17
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   1e-07  14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   2e-07  12
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   3e-07  13
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    34   3e-07  14
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000517_894(CP000517|pid:none) Lactobacillus helveticus DPC 457...    35   0.60
AL034559_20(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    33   3.9
(Q0SM54) RecName: Full=DNA mismatch repair protein mutS;  &CP000...    32   5.1
protein update 2009. 5.13
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFD433 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD433Z
3' end seq. 
>CFD433Z.Seq
----------TGAAGAATTATCAGGAAATGATTTGAAAATTGTTGAAAAGGTAAATAAAA
TATCCAATGGATGAATCAAATGATTTAACATTTTGTTTTGGTTATTTTCATTTAATTGAA
AAATCAATTGGTTTATTTTCAATGGATGAAAAAAAGAAATTCACACCAAATGAATCTGTT
ATATCAGAGAATTTCATTCACTGTTTTAGAGATATTAATAATAATTTAGTTGATATACCA
AATATTCATATATCAAAAGATTTATCCTGAAGTTTTATCTTCAATTGATTTTAAAAATTT
TAAACCATATCAATTAATTACAAATCAAGATTTAAATAG
Length of 3' end seq. 329
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -