CFD422
Library CF
(Link to library)
Clone ID CFD422
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD422F
(Link to Original site)
Representative DNA sequence
>CFD422 (CFD422Q) /CSM/CF/CFD4-A/CFD422Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ivvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame B:
l*yfvhiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknqkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/ 155 2e-37
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 155 2e-37
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/ 155 2e-37
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/ 155 2e-37
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 155 2e-37
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/ 155 2e-37
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/ 155 2e-37
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/ 155 2e-37
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/ 155 2e-37
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/ 155 2e-37

own update 2002.11.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 88 8e-31 2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 88 4e-30 4
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 2e-28 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 88 2e-28 6
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 88 3e-14 1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 80 8e-12 1
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72. 40 0.025 5
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 42 0.037 2
AX196294|AX196294.1 Sequence 1 from Patent WO0151627. 38 0.039 4
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces. 28 0.040 9
dna update 2004. 1.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 74,169,940
protein update 2009. 5.13
PSORT -
5' end seq. ID CFD422F
5' end seq.
>CFD422F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -