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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD409
Library CF
(Link to library)
Clone ID CFD409
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12865-1
Original site URL
Representative seq. ID CFD409Z
(Link to Original site)
Representative DNA sequence 
>CFD409 (CFD409Q) /CSM/CF/CFD4-A/CFD409Q.Seq.d/
XXXXXXXXXXTTCAAATACCGCTANCAATAAAGCTAAGCCATCATCAAATGTTAGTGATA
ACAAAGAAAGCAATGCTTCCAATAAAGCCAANCCATCATCGAATACCAATGATGCCAAAC
CAAAGNCTGATGAAACTAAAACCAAAGCTGGTTCACCAAAANCTGATGCCAAACCAAAAA
CTACTCAAGATGAATCCCTTGATAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---SNTAXNKAKPSSNVSDNKESNASNKAXPSSNTNDAKPKXDETKTKAGSPKXDAKPKT
TQDESLDS
Translated Amino Acid sequence (All Frames) 
Frame A:
---SNTAXNKAKPSSNVSDNKESNASNKAXPSSNTNDAKPKXDETKTKAGSPKXDAKPKT
TQDESLDS


Frame B:
---qiplxiklshhqmlvitkkamlpikpxhhripmmpnqxlmklkpklvhqxlmpnqkl
lkmnpli


Frame C:
---kyrxq*s*aiikc***qrkqcfq*sqxiieyq*cqtkx**n*nqswftkx*cqtkny
sr*ip**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD409 (CFD409Q) /CSM/CF/CFD4-A/CFD409Q.Seq.d/                        365   e-100
SSL677 (SSL677Q) /CSM/SS/SSL6-D/SSL677Q.Seq.d/                        341   2e-93
SSK563 (SSK563Q) /CSM/SS/SSK5-C/SSK563Q.Seq.d/                        341   2e-93
SSK449 (SSK449Q) /CSM/SS/SSK4-C/SSK449Q.Seq.d/                        341   2e-93
SSI241 (SSI241Q) /CSM/SS/SSI2-B/SSI241Q.Seq.d/                        341   2e-93
SSH667 (SSH667Q) /CSM/SS/SSH6-C/SSH667Q.Seq.d/                        341   2e-93
SSG743 (SSG743Q) /CSM/SS/SSG7-B/SSG743Q.Seq.d/                        341   2e-93
SSF377 (SSF377Q) /CSM/SS/SSF3-D/SSF377Q.Seq.d/                        341   2e-93
SSD820 (SSD820Q) /CSM/SS/SSD8-A/SSD820Q.Seq.d/                        341   2e-93
SLC492 (SLC492Q) /CSM/SL/SLC4-D/SLC492Q.Seq.d/                        341   2e-93
own update 2003. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AK112923|AK112923.1 Ciona intestinalis cDNA, clone:ciad027n15, full insert sequence.    34   0.13   2
BW003266|BW003266.1 Ciona intestinalis cDNA, clone:rcibd019g02, 3' end, single read.    34   0.13   2
BW184065|BW184065.1 Ciona intestinalis cDNA, clone:rciht029c07, 3' end, single read.    34   0.13   2
BW022429|BW022429.1 Ciona intestinalis cDNA, clone:rcibd072n10, 3' end, single read.    34   0.13   2
BW009040|BW009040.1 Ciona intestinalis cDNA, clone:rcibd035b17, 3' end, single read.    34   0.13   2
BW021325|BW021325.1 Ciona intestinalis cDNA, clone:rcibd006j15, 3' end, single read.    34   0.13   2
BW007302|BW007302.1 Ciona intestinalis cDNA, clone:rcibd002o17, 3' end, single read.    34   0.13   2
BW063920|BW063920.1 Ciona intestinalis cDNA, clone:rciad090i22, 3' end, single read.    34   0.13   2
BW190138|BW190138.1 Ciona intestinalis cDNA, clone:ciad089l03, 5' end, single read.    34   0.13   2
BW033179|BW033179.1 Ciona intestinalis cDNA, clone:cibd022d04, 5' end, single read.    34   0.13   2
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC141284_1(BC141284|pid:none) Mus musculus pleiomorphic adenoma ...    36   0.46
BC167178_1(BC167178|pid:none) Synthetic construct Mus musculus c...    36   0.46
CP000806_4550(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    32   6.6
protein update 2009. 5.13
PSORT 

 psg: 0.60  gvh: 0.23  alm: 0.82  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for CFD409 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD409Z
3' end seq. 
>CFD409Z.Seq
----------TTCAAATACCGCTANCAATAAAGCTAAGCCATCATCAAATGTTAGTGATA
ACAAAGAAAGCAATGCTTCCAATAAAGCCAANCCATCATCGAATACCAATGATGCCAAAC
CAAAGNCTGATGAAACTAAAACCAAAGCTGGTTCACCAAAANCTGATGCCAAACCAAAAA
CTACTCAAGATGAATCCCTTGATAGT
Length of 3' end seq. 196
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -