CFD408
Library CF
(Link to library)
Clone ID CFD408
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFD408P
(Link to Original site)
Representative DNA sequence
>CFD408 (CFD408Q) /CSM/CF/CFD4-A/CFD408Q.Seq.d/
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA
GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGXXXX
XXXXXXGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGT
AAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTC
GTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAA
CCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGT
GCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAA
TTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCA
GCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTT
TTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGCAAGGTTTTGGGTTTG
GATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGCGCT
ACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAT
GGTGTAATNCNCTATGTGTATTGG
sequence update 2001. 6. 1
Translated Amino Acid sequence
YLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKA
KRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGL
PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQE
DPIISGCYNTMGQTSENV---

---DEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKL
KPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIG
PAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLG
ATGARQMATISRELHRRKGKYGVXXYVYW


Translated Amino Acid sequence (All Frames)
Frame A:
ifiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s
*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrf
tkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcpr
gsnh*wllqhygsnl*kc---

---DEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKL
KPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIG
PAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLG
ATGARQMATISRELHRRKGKYGVXXYVYW

Frame B:
YLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKA
KRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGL
PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQE
DPIISGCYNTMGQTSENV---

---mnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn*
nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsnhplwvlv
qplqfqpp*nklvsplkistflksmkllllkhftvarfwvwi*tkliqmalvsl*vih*a
llvpvkwlpfqenyivvkvnmv*xxmci

Frame C:
iyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvkl
keehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvy
qrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkr
iqslvvvttlwvkplkms---

---*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgqik
tsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrtihygyws
srcnssrlktswshh*ryrrf*nq*sfcfssilqlqgfgfgyeqs*skwlwyrfrssirr
ywcpsngyhfkritss*r*iwcnxlcvl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD408 (CFD408Q) /CSM/CF/CFD4-A/CFD408Q.Seq.d/ 2355 0.0
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/ 1189 0.0
SFK756 (SFK756Q) /CSM/SF/SFK7-C/SFK756Q.Seq.d/ 1189 0.0
SFK576 (SFK576Q) /CSM/SF/SFK5-D/SFK576Q.Seq.d/ 1189 0.0
AFG267 (AFG267Q) /CSM/AF/AFG2-C/AFG267Q.Seq.d/ 1189 0.0
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/ 1187 0.0
SLH575 (SLH575Q) /CSM/SL/SLH5-D/SLH575Q.Seq.d/ 1187 0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/ 1187 0.0
SLG603 (SLG603Q) /CSM/SL/SLG6-A/SLG603Q.Seq.d/ 1187 0.0
SLE133 (SLE133Q) /CSM/SL/SLE1-B/SLE133Q.Seq.d/ 1187 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1178 0.0 2
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 3e-18 7
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence. 40 3e-14 6
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 1e-12 5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 5e-11 4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 2e-09 3
CB893643|CB893643.1 EST646435 HOGA Medicago truncatula cDNA clone HOGA-28F15, mRNA sequence. 40 5e-09 5
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 3e-08 2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 3e-08 2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence. 68 3e-08 2
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 370 0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 212 e-103
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698.... 212 e-103
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 210 e-103
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 214 e-101
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 213 e-101
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3... 208 e-101
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 219 e-101
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 219 e-101
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789. 209 e-100
protein update 2009. 5.13
PSORT

psg: 0.87 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.33 mip: 0.05
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: peroxisomal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFD408 is nuc

5' end seq. ID CFD408F
5' end seq.
>CFD408F.Seq
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA
GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCG----
------
Length of 5' end seq. 596
3' end seq. ID CFD408Z
3' end seq.
>CFD408Z.Seq
----------GATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGC
AGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCAT
CGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATT
AAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGA
TGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGT
TGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGG
TCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGA
CGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGCAAGGTTTTGGG
TTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGG
CGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAA
ATATGGTGTAATNCNCTATGTGTATTGG
Length of 3' end seq. 618
Connected seq. ID CFD408P
Connected seq.
>CFD408P.Seq
ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA
AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC
AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC
TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA
TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT
ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT
ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT
TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT
AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA
GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCG----
------GATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGT
AAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTC
GTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAA
CCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGT
GCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAA
TTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCA
GCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTT
TTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGCAAGGTTTTGGGTTTG
GATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGCGCT
ACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAT
GGTGTAATNCNCTATGTGTATTGG
Length of connected seq. 1214
Full length Seq ID -
Full length Seq. -
Length of full length seq. -