CFD383
Library CF
(Link to library)
Clone ID CFD383
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFD383E
(Link to Original site)
Representative DNA sequence
>CFD383 (CFD383Q) /CSM/CF/CFD3-D/CFD383Q.Seq.d/
AAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAAC
AACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGA
ATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTT
CAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTG
GTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTAT
TATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAAT
TAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTG
AACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAG
AACATAGTGTGCCAGATAATGAAAGAAGTANANCCTCTGTTGTTGCATCAATTATTGCAG
CAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGANCATA
TGATTTCATTAAAACTTAAAGTTGNAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTG
ATAATAACCTTCACATTTCTGAGAGTGCCNCNGCCATTAAGGGTGCAGTTGTAGAGAGAG
CAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTAATATGA
TCTCTCATCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAA
TCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTANNCAAGAAGTTCAACAAATTCAAA
CTGTTTCCTGCTCAAGNAAAAAAAAAAAAAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
nnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVS
DFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPEL
EFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSXXSVVASIIAA
GYSVGQDAAIKARQVDEXHMISLKLKVXAEAVKAKANEIDNNLHISESAXAIKGAVVERA
NALDERFQISGFFKSASNMISHQASNLMKAAEENSTVSPIVNKVSSFGTFIXQEVQQIQT
VSCSXKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ktthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilkqf
qifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlhqn
*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkevxplllhqllq
qvivldktlplkhvklmkxi*fh*nlklxlklskqkqmkliitftflrvpxplrvql*re
qmhsmkdsksqvslrvqvi*sliklpi**kqpkkivqfhqs*ikfqvlvlllxkkfnkfk
lfpaqxkkkk


Frame B:
kqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*nsf
rfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiytri
rv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**kkxxlcccinycs
rl*cwtrrch*stss**rxydfikt*sxs*scqsksk*n***pshf*ecxxh*gcscres
kctr*kipnlrfl*eck*ydlsssfqfnessrrk*ysftnrk*sfkfwyfyxxrsstnsn
cfllkxkkkk


Frame C:
nnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTVS
DFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPEL
EFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSXXSVVASIIAA
GYSVGQDAAIKARQVDEXHMISLKLKVXAEAVKAKANEIDNNLHISESAXAIKGAVVERA
NALDERFQISGFFKSASNMISHQASNLMKAAEENSTVSPIVNKVSSFGTFIXQEVQQIQT
VSCSXKKKKK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD383 (CFD383Q) /CSM/CF/CFD3-D/CFD383Q.Seq.d/ 890 0.0
SHA248 (SHA248Q) /CSM/SH/SHA2-B/SHA248Q.Seq.d/ 854 0.0
VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/ 848 0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/ 848 0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/ 848 0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/ 848 0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/ 848 0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/ 848 0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/ 848 0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/ 848 0.0

own update 2002. 9.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 46 5e-08 11
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 40 2e-06 18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 7e-05 16
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 32 1e-04 16
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 34 2e-04 15
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 40 6e-04 13
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 38 9e-04 15
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 34 0.001 14
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 38 0.001 12
AL773596|AL773596.12 Zebrafish DNA sequence from clone CH211-208G24 in linkage group 17. 40 0.002 11
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM... 54 6e-06
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM... 54 6e-06
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen... 53 2e-05
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 52 4e-05
EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding... 50 8e-05
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM... 50 1e-04
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit... 50 1e-04
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m... 49 2e-04
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c... 48 5e-04
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g... 48 5e-04
protein update 2009. 6.30
PSORT

psg: 0.84 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08
nuc: 0.08 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for CFD383 is nuc

5' end seq. ID CFD383F
5' end seq.
>CFD383F.Seq
AAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAAC
AACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGA
ATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTT
CAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTG
GTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTAT
TATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAAT
TAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTG
AACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAG
AACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAG
CAGGTTATAGTGTTGGACAA----------
Length of 5' end seq. 560
3' end seq. ID CFD383Z
3' end seq.
>CFD383Z.Seq
----------ATTGTAAATAGAGAACATAGTGNGNCAGATAATGAAAGAAGTACNTCCTC
TGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGC
ACGTCAAGTTGATGAAGANCATATGATTTCATTAAAACTTAAAGTTGNAGCTGAAGCTGT
CAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCNCNGCCAT
TAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTT
CTTTAAGAGTGCAAGTAATATGATCTCTCATCAAGCTTCCAATTTAATGAAAGCAGCCGA
AGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAN
NCAAGAAGTTCAACAAATTCAAACTGTTTCCTGCTCAAGNAAAAAAAAAAAAAAA
Length of 3' end seq. 465
Connected seq. ID CFD383P
Connected seq.
>CFD383P.Seq
AAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAAC
AACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGA
ATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTT
CAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTG
GTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTAT
TATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAAT
TAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTG
AACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAG
AACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAG
CAGGTTATAGTGTTGGACAA----------ATTGTAAATAGAGAACATAGTGNGNCAGAT
AATGAAAGAAGTACNTCCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGA
CAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGANCATATGATTTCATTAAAACTT
AAAGTTGNAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATT
TCTGAGAGTGCCNCNGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAA
AGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTAATATGATCTCTCATCAAGCTTCC
AATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCA
AGTTTTGGTACTTTTATTANNCAAGAAGTTCAACAAATTCAAACTGTTTCCTGCTCAAGN
AAAAAAAAAAAAAAA
Length of connected seq. 1025
Full length Seq ID CFD383E
Full length Seq.
>CFD383E.Seq
AAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACAAC
AACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAATGA
ATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGTTT
CAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAACTG
GTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTTAT
TATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGAAT
TAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGGTG
AACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAG
AACATAGTGTGCCAGATAATGAAAGAAGTANANCCTCTGTTGTTGCATCAATTATTGCAG
CAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGANCATA
TGATTTCATTAAAACTTAAAGTTGNAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTG
ATAATAACCTTCACATTTCTGAGAGTGCCNCNGCCATTAAGGGTGCAGTTGTAGAGAGAG
CAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTAATATGA
TCTCTCATCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAA
TCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTANNCAAGAAGTTCAACAAATTCAAA
CTGTTTCCTGCTCAAGNAAAAAAAAAAAAAAA
Length of full length seq. 932