CFD380
Library CF
(Link to library)
Clone ID CFD380
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD380P
(Link to Original site)
Representative DNA sequence
>CFD380 (CFD380Q) /CSM/CF/CFD3-D/CFD380Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAA
AAAAXXXXXXXXXXAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTC
AAGAGAACTCCAAAGAGAACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATG
TGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCC
TCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTG
TAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACG
TGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGC
TGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGA
TGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGA
TGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGG
TACATGATTGGGCATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---VMNVKSNMMAPNVVSRELQREPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPN
YHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAEN
ENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGT*
lgimigtmkmviigm


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkktxkk---

---rl*m*nqt*wlqmlcqenskenhvvnqihvpemknvlppktesfv*nqlviilvvlq
itiayvviklmv*nvfqivrkqdvmmsnvqisidvlkdvvvs*vvnlihqdnqdpliglk
mkmmivtmmivtmmmmnmmvimmavtvtmmvimmvimmmtiimvmmtmimigtmimigvh
dwa**lgq*rw**le*

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---gyeckikhdgskccvkrtpkrtml*tkfmcqr*kmcchqrqnhlcktnl**yslssk
lplhmw**n*wckmcsrl*eskm**crmsrfp*mc*ktwwylkl*i*stkttkip*lg*k
*k**s*l**s*l****i*w*l*wp*r*l*w*l*w*l***qllw***l***lgq***lgym
ighndwdnedgdnwnd

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknxkk---

---VMNVKSNMMAPNVVSRELQREPCCKPNSCARDEKCVATKDRIICVKPTCDNTRCPPN
YHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDWAEN
ENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWGT*
lgimigtmkmviigm

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD380 (CFD380Q) /CSM/CF/CFD3-D/CFD380Q.Seq.d/ 684 0.0
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/ 668 0.0
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/ 668 0.0
SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/ 668 0.0
SLB231 (SLB231Q) /CSM/SL/SLB2-B/SLB231Q.Seq.d/ 668 0.0
SLB168 (SLB168Q) /CSM/SL/SLB1-C/SLB168Q.Seq.d/ 668 0.0
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/ 668 0.0
SFL369 (SFL369Q) /CSM/SF/SFL3-C/SFL369Q.Seq.d/ 668 0.0
SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/ 668 0.0
SFL183 (SFL183Q) /CSM/SF/SFL1-D/SFL183Q.Seq.d/ 668 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 557 0.0 6
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 557 0.0 7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 557 0.0 12
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 557 0.0 5
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 5e-30 3
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 88 2e-13 1
AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 52 0.002 3
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 52 0.003 3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 52 0.011 1
AC139189|AC139189.1 Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence. 40 0.071 3
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 222 2e-58
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 93 7e-18
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 92 1e-17
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 39 0.002
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 44 0.006
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.014
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 42 0.018
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 42 0.024
AK126919_1(AK126919|pid:none) Homo sapiens cDNA FLJ44971 fis, cl... 40 0.069
BT022830_1(BT022830|pid:none) Drosophila melanogaster IP13337 fu... 40 0.069
protein update 2009. 5.13
PSORT

psg: 0.23 gvh: 0.29 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.26 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CFD380 is nuc

5' end seq. ID CFD380F
5' end seq.
>CFD380F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFD380Z
3' end seq.
>CFD380Z.Seq
----------AGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTCAAGA
GAACTCCAAAGAGAACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATGTGTT
GCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCCTCCA
AATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTGTAAG
AAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACGTGGT
GGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGAA
AATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGT
GATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGAC
AATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGGTACA
TGATTGGGCATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGAT
Length of 3' end seq. 580
Connected seq. ID CFD380P
Connected seq.
>CFD380P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAA
AAAA----------AGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGTTGTGTC
AAGAGAACTCCAAAGAGAACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAAAAATG
TGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGTTGTCC
TCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCAGATTG
TAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAAAGACG
TGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGC
TGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGA
TGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGA
TGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGG
TACATGATTGGGCATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGAT
Length of connected seq. 704
Full length Seq ID -
Full length Seq. -
Length of full length seq. -