CFD372
Library CF
(Link to library)
Clone ID CFD372
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFD372P
(Link to Original site)
Representative DNA sequence
>CFD372 (CFD372Q) /CSM/CF/CFD3-C/CFD372Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNCCTTTTTTGAAAAAAAAAAX
XXXXXXXXXTTNANAATNTAAAAACCAAAGTTTCAAGANAAAAGAGGGTTTCCCCCCAGA
TCCAACAACGTNTCATTTTGGTGGTAANNAATTAAAAANATGGTNGTACTCTNTCTGATT
ACAATATCCAAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAANAGNTGGTATGCA
AATCTTTGTNAAAANCATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATA
ATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAA
GATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTC
AAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGGGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATCCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
nsfllyky*ihilffyil*HFIKKKKKKKXKKSPFLKKK---

---XXXKNQSFKXKEGFPPDPTTXHFGGXXLKXWXYSX*lqypkknqlshlvlrlxxgmq
ifvkxinw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lqhs
kgihspfspqikgwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfr
r*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknkn
srqrryp


Translated Amino Acid sequence (All Frames)
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkkx*kixffekk---

---xxx*kpkfqxkrgfpprsnnvsfww*xikxmvvlxlitiskkestlplgpqixxwya
nlcxxh*lvrpsllklraqiilkmlkqrfktkkvshqtnkd*fslvnn*kmvvlslittf
krnplsi*ssd*gvvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfs
pvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqk
fktkkvs

Frame B:
nsfllyky*ihilffyil*HFIKKKKKKKXKKSPFLKKK---

---XXXKNQSFKXKEGFPPDPTTXHFGGXXLKXWXYSX*lqypkknqlshlvlrlxxgmq
ifvkxinw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lqhs
kgihspfspqikgwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfr
r*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknkn
srqrryp

Frame C:
ihfyytnikfifyffiycnis*kkkkkkxlknxlf*kkk---

---xnxktkvsrxkrvspqiqqrxilvvxn*kxgxtlsdyniqkrinsptwssd*xxvck
slxkxltgktitlevegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniq
kestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifa
gkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktki
qdkegip

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD372 (CFD372Q) /CSM/CF/CFD3-C/CFD372Q.Seq.d/ 1338 0.0
VFI713 (VFI713Q) /CSM/VF/VFI7-A/VFI713Q.Seq.d/ 1217 0.0
SFC110 (SFC110Q) /CSM/SF/SFC1-A/SFC110Q.Seq.d/ 1213 0.0
SFE817 (SFE817Q) /CSM/SF/SFE8-A/SFE817Q.Seq.d/ 1211 0.0
CFI465 (CFI465Q) /CSM/CF/CFI4-C/CFI465Q.Seq.d/ 1207 0.0
CHD648 (CHD648Q) /CSM/CH/CHD6-B/CHD648Q.Seq.d/ 1205 0.0
CFK335 (CFK335Q) /CSM/CF/CFK3-B/CFK335Q.Seq.d/ 1205 0.0
CFI462 (CFI462Q) /CSM/CF/CFI4-C/CFI462Q.Seq.d/ 1205 0.0
AFO836 (AFO836Q) /CSM/AF/AFO8-B/AFO836Q.Seq.d/ 1205 0.0
CHA266 (CHA266Q) /CSM/CH/CHA2-C/CHA266Q.Seq.d/ 1203 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1072 0.0 4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 1057 0.0 4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 1057 0.0 4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 632 0.0 4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 644 0.0 3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 628 e-176 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 476 e-146 4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 476 e-146 4
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read. 168 7e-87 6
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read. 188 1e-80 5
dna update 2004. 1.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 353 5e-96
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 353 5e-96
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 353 5e-96
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 347 3e-94
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 337 2e-91
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 337 2e-91
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 337 2e-91
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 334 2e-90
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 333 4e-90
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 333 4e-90
protein update 2009. 5.13
PSORT

psg: 0.55 gvh: 0.27 alm: 0.68 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.52 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CFD372 is nuc

5' end seq. ID CFD372F
5' end seq.
>CFD372F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNCCTTTTTTGAAAAAAAAAA-
---------
Length of 5' end seq. 119
3' end seq. ID CFD372Z
3' end seq.
>CFD372Z.Seq
----------TTNANAATNTAAAAACCAAAGTTTCAAGANAAAAGAGGGTTTCCCCCCAG
ATCCAACAACGTNTCATTTTGGTGGTAANNAATTAAAAANATGGTNGTACTCTNTCTGAT
TACAATATCCAAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAANAGNTGGTATGC
AAATCTTTGTNAAAANCATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGAT
AATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGGGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAAT
GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTC
GCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACT
GGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAA
ATTCAAGACAAAGAAGGTATCCCA
Length of 3' end seq. 734
Connected seq. ID CFD372P
Connected seq.
>CFD372P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNCCTTTTTTGAAAAAAAAAA-
---------TTNANAATNTAAAAACCAAAGTTTCAAGANAAAAGAGGGTTTCCCCCCAGA
TCCAACAACGTNTCATTTTGGTGGTAANNAATTAAAAANATGGTNGTACTCTNTCTGATT
ACAATATCCAAAAAAGAATCAACTCTCCCACTTGGTCCTCAGATTAANAGNTGGTATGCA
AATCTTTGTNAAAANCATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATA
ATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAA
GATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTC
AAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGGGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATCCCA
Length of connected seq. 853
Full length Seq ID -
Full length Seq. -
Length of full length seq. -