>CFD371 (CFD371Q) /CSM/CF/CFD3-C/CFD371Q.Seq.d/
XXXXXXXXXXGTGCCCCAAATGGTAAGAAATTCTTCCCATCCCCAAATGCCGGTATCTTT
GTCAATGATTTTGAATCACCAGAGGATTTAGCTGCCCATTTGAAATTCTTGGATGAAAAT
GATGAAGAGTATGAAAAATGTTTACAATGGAAAAAAACAGGCCCTACAAAAGATTGGATG
GTGGTTATGGACCAACTCAAGGCAAATGGTGATTGTAGAACTTGTATCAAGGTTGCCGAT
CTTCAAAGAAAAGAGGTTGGTATGGTTGTTAATAAAAATACCTCAATGCAATTAGTACCA
AAATCATTCACTCCAAATGATGGTATCGTTGTATTTATTAGAGAAAGAAATACTTTTTGG
TTCACATCGGTTGCAATACCTTATTCAACTACTTATGTCGAGTTGGTTGAAATCTTTTCA
AACGCTTTAAATCATAAAGGTGAAATTTATTCAGCTAACGATCCTTTGGTCAAAAGAACC
AATCATTGATTTCAAAATGAAAGATAAAACTATTAAATTAACTCAAAATCAAGAAATTGA
AGTTTTATTTGCAGATTTAG

---APNGKKFFPSPNAGIFVNDFESPEDLAAHLKFLDENDEEYEKCLQWKKTGPTKDWMV
VMDQLKANGDCRTCIKVADLQRKEVGMVVNKNTSMQLVPKSFTPNDGIVVFIRERNTFWF
TSVAIPYSTTYVELVEIFSNALNHKGEIYSANDPLVKRTNH*fqner*ny*insksrn*s
ficrf

Frame A:
---cpkw*eilpipkcrylcq*f*itrgfscpfeilg*k**rv*kmftmeknrpykrldg
gygptqgkw*l*nlyqgcrsskkrgwygc**kylnaistkiihsk*wyrciy*rkkyflv
higcntlfnylcrvg*nlfkrfks*r*nlfs*rsfgqknqslisk*kiklln*lkikklk
fylqi*


Frame B:
---APNGKKFFPSPNAGIFVNDFESPEDLAAHLKFLDENDEEYEKCLQWKKTGPTKDWMV
VMDQLKANGDCRTCIKVADLQRKEVGMVVNKNTSMQLVPKSFTPNDGIVVFIRERNTFWF
TSVAIPYSTTYVELVEIFSNALNHKGEIYSANDPLVKRTNH*fqner*ny*insksrn*s
ficrf


Frame C:
---pqmvrnsshpqmpvslsmilnhqri*lpi*nswmkmmksmknvyngkkqalqkigww
lwtnsrqmvivelvsrlpifkekrlvwllikipqcn*yqnhslqmmvslyllekeilfgs
hrlqyliqllmsswlksfqtl*iikvkfiqltilwskepiidfkmkdktikltqnqeiev
lfadl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD371 (CFD371Q) /CSM/CF/CFD3-C/CFD371Q.Seq.d/                       1049   0.0
SFD768 (SFD768Q) /CSM/SF/SFD7-C/SFD768Q.Seq.d/                       1033   0.0
CHE459 (CHE459Q) /CSM/CH/CHE4-C/CHE459Q.Seq.d/                       1033   0.0
CHB249 (CHB249Q) /CSM/CH/CHB2-C/CHB249Q.Seq.d/                       1033   0.0
AFN482 (AFN482Q) /CSM/AF/AFN4-D/AFN482Q.Seq.d/                       1033   0.0
AFN272 (AFN272Q) /CSM/AF/AFN2-C/AFN272Q.Seq.d/                       1033   0.0
AFA373 (AFA373Q) /CSM/AF/AFA3-D/AFA373Q.Seq.d/                       1033   0.0
SFB161 (SFB161Q) /CSM/SF/SFB1-C/SFB161Q.Seq.d/                       1027   0.0
CFG731 (CFG731Q) /CSM/CF/CFG7-B/CFG731Q.Seq.d/                       1027   0.0
CFC792 (CFC792Q) /CSM/CF/CFC7-D/CFC792Q.Seq.d/                       1027   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB444992|CB444992.1 696221 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.    54   0.002  1
CB437717|CB437717.1 685592 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.    54   0.002  1
CB418043|CB418043.1 590802 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.    54   0.002  1
CB444648|CB444648.1 695837 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.    54   0.002  1
CB437369|CB437369.1 684827 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.    54   0.002  1
AC024084|AC024084.4 Human Chromosome 7 clone RP11-212C18, complete sequence.    34   0.023  8
AC069316|AC069316.2 Homo sapiens chromosome 11 clone RP11-93E4, WORKING DRAFT SEQUENCE, 19 unordered pieces.    38   0.049  6
AL049642|AL049642.5 Human DNA sequence from clone RP4-685D6 on chromosome Xq21.1-21.33.    38   0.078  8
BX294392|BX294392.3 Zebrafish DNA sequence from clone CH211-262O24 in linkage group 23.    48   0.095  3
AC109722|AC109722.4 Rattus norvegicus clone CH230-319O21, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   0.10   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY557602_1(AY557602|pid:none) Medicago truncatula cultivar Jemal...    70   3e-11
Y18529_1(Y18529|pid:none) Vigna radiata mRNA for alpha-1,3-fucos...    70   4e-11
AY082444_1(AY082444|pid:none) Medicago sativa clone MS1-3FTa alp...    70   5e-11
AJ618932_1(AJ618932|pid:none) Physcomitrella patens fuct gene fo...    65   2e-09
DQ789145_1(DQ789145|pid:none) Lemna minor alpha-1,3-fucosyltrans...    64   2e-09
AJ416755_1(AJ416755|pid:none) Medicago truncatula partial mRNA f...    64   3e-09
AJ891040_1(AJ891040|pid:none) Populus tremula x Populus alba mRN...    63   4e-09
(Q9LJK1) RecName: Full=Glycoprotein 3-alpha-L-fucosyltransferase...    63   6e-09
AY302219_1(AY302219|pid:none) Arabidopsis thaliana alpha 1,3 fuc...    62   8e-09
AJ429145_1(AJ429145|pid:none) Physcomitrella patens mRNA for alp...    62   8e-09

 psg: 0.83  gvh: 0.20  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for CFD371 is nuc

>CFD371Z.Seq
----------GTGCCCCAAATGGTAAGAAATTCTTCCCATCCCCAAATGCCGGTATCTTT
GTCAATGATTTTGAATCACCAGAGGATTTAGCTGCCCATTTGAAATTCTTGGATGAAAAT
GATGAAGAGTATGAAAAATGTTTACAATGGAAAAAAACAGGCCCTACAAAAGATTGGATG
GTGGTTATGGACCAACTCAAGGCAAATGGTGATTGTAGAACTTGTATCAAGGTTGCCGAT
CTTCAAAGAAAAGAGGTTGGTATGGTTGTTAATAAAAATACCTCAATGCAATTAGTACCA
AAATCATTCACTCCAAATGATGGTATCGTTGTATTTATTAGAGAAAGAAATACTTTTTGG
TTCACATCGGTTGCAATACCTTATTCAACTACTTATGTCGAGTTGGTTGAAATCTTTTCA
AACGCTTTAAATCATAAAGGTGAAATTTATTCAGCTAACGATCCTTTGGTCAAAAGAACC
AATCATTGATTTCAAAATGAAAGATAAAACTATTAAATTAACTCAAAATCAAGAAATTGA
AGTTTTATTTGCAGATTTAG