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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD364
Library CF
(Link to library)
Clone ID CFD364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD364Z
(Link to Original site)
Representative DNA sequence 
>CFD364 (CFD364Q) /CSM/CF/CFD3-C/CFD364Q.Seq.d/
XXXXXXXXXXGTGATGATGTCGAAATGTCCAGATTTCCATAGATGTGTTNAAAGACGTGG
TGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGA
AAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGG
TGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGA
CAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGCGTA
CATGATTGGGATACCGATTGGGCNCAATNNAGATGGTGATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---MMSKCPDFHRCVXRRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGD
YDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWAYMIGIPIGXNXDGD
Translated Amino Acid sequence (All Frames) 
Frame A:
---**crnvqisidvxkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmv
immavtvtmmvimmvimmmtiimvmmtmimigtmimigrt*lgyrlgxxxmvi


Frame B:
---ddvemsrfp*mcxktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*
l*wp*r*l*w*l*w*l***qllw***l***lgq***lgvhdwdtdwaqxrw*


Frame C:
---MMSKCPDFHRCVXRRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGD
YDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDWAYMIGIPIGXNXDGD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD364 (CFD364Q) /CSM/CF/CFD3-C/CFD364Q.Seq.d/                        228   4e-59
SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                        212   3e-54
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        212   3e-54
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        212   3e-54
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        212   3e-54
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        212   3e-54
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        212   3e-54
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        212   3e-54
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        212   3e-54
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        212   3e-54
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   202   9e-51  2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   202   9e-51  2
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   202   1e-50  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   202   1e-50  2
AC105898|AC105898.1 Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone BACR25P15, complete sequence.    36   3.2    2
AQ656767|AQ656767.1 Sheared DNA-21D17.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-21D17, genomic survey sequence.    42   4.8    1
AQ950783|AQ950783.1 Sheared DNA-52C14.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-52C14, genomic survey sequence.    42   4.8    1
AL484659|AL484659.1 T. brucei sheared genomic DNA clone 291e02, forward sequence.    42   4.8    1
AE003585|AE003585.3 Drosophila melanogaster chromosome 2L section 6 of 83 of the complete sequence.    36   6.0    2
AC024295|AC024295.7 Homo sapiens chromosome 14, clone RP11-108L12, complete sequence.    40   19     1
dna update 2004. 1.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    74   2e-12
protein update 2008.12.25
PSORT 

 psg: 0.60  gvh: 0.37  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFD364 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD364Z
3' end seq. 
>CFD364Z.Seq
----------GTGATGATGTCGAAATGTCCAGATTTCCATAGATGTGTTNAAAGACGTGG
TGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGATTGGGCTGA
AAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGG
TGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGA
CAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGATTGGGCGTA
CATGATTGGGATACCGATTGGGCNCAATNNAGATGGTGATA
Length of 3' end seq. 331
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -