>CFD360 (CFD360Q) /CSM/CF/CFD3-C/CFD360Q.Seq.d/
XXXXXXXXXXGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTT
TTCAGCTACCCTCTCTGATACCATTTCGTCCAATCTGTAAGAAGTTTATGAACAATCCCA
TTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTAC
GTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGAC
TTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATC
CTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGT
ATCGAACAATACCGTAAATTCAAAAACTTTGAATCCTCGTATCATGGTTGCCACTAATAT
CTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGA
ATCT

---tkdlqthpsqqtsydvfsypl*yhfvqsvrsl*TIPLEIYINDGSKLTLHGLQQYYV
PITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRI
EQYRKFKNFESSYHGCH*ylwswyry*tcqcrhqlryg*i

Frame A:
---ykrssnssqptnkl*cfqlpslipfrpickkfmnnpignlhq*w**thspwsstilr
tnh*rtke*kth*tlgfirl*ssryfrqic*tc*clk*dpprywfpihlyss*prskgsy
rtip*iqkl*ilvswlplislvvvsilnvsmsssttiwln


Frame B:
---tkdlqthpsqqtsydvfsypl*yhfvqsvrsl*TIPLEIYINDGSKLTLHGLQQYYV
PITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRI
EQYRKFKNFESSYHGCH*ylwswyry*tcqcrhqlryg*i


Frame C:
---qkifklipankqvmmfsatlsdtissnl*evyeqshwkstsmmvvnslsmvfnntty
qslknkriknslnswih*tlikplfssnlldvlmp*irsskilvshpsvfivtsikrivs
nntvnsktlnprimvatnifgrgidiervnvvinydmaes

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD360 (CFD360Q) /CSM/CF/CFD3-C/CFD360Q.Seq.d/                        940   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                        892   0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/                        892   0.0
VFA442 (VFA442Q) /CSM/VF/VFA4-B/VFA442Q.Seq.d/                        892   0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                        892   0.0
SFL133 (SFL133Q) /CSM/SF/SFL1-B/SFL133Q.Seq.d/                        892   0.0
SFL121 (SFL121Q) /CSM/SF/SFL1-A/SFL121Q.Seq.d/                        892   0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/                        892   0.0
SFE227 (SFE227Q) /CSM/SF/SFE2-B/SFE227Q.Seq.d/                        892   0.0
SFD888 (SFD888Q) /CSM/SF/SFD8-D/SFD888Q.Seq.d/                        892   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF936994|BF936994.1 EST460049 Schistosoma mansoni female, Phil LoVerde/Joe MerrickSchistosoma mansoni cDNA clone SMFCE26 5' end, mRNA sequence.    64   2e-06  1
CD183694|CD183694.1 MS1-0038U-A290-H01-U.B MS1-0038 Schistosoma mansoni cDNA clone MS1-0038U-A290-H01.B, mRNA sequence.    64   2e-06  1
CD145566|CD145566.1 MG1-0105U-A350-B05-U.B MG1-0105 Schistosoma mansoni cDNA clone MG1-0105U-A350-B05.B, mRNA sequence.    64   2e-06  1
CD163190|CD163190.1 ML1-0082U-V216-B10-U.B ML1-0082 Schistosoma mansoni cDNA clone ML1-0082U-V216-B10.B, mRNA sequence.    64   2e-06  1
CD116259|CD116259.1 ME1-0038P-A145-H11-U.B ME1-0038 Schistosoma mansoni cDNA clone ME1-0038P-A145-H11.B, mRNA sequence.    64   2e-06  1
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence.    38   3e-05  3
CD170044|CD170044.1 MS1-0002T-L205-C06-U.B MS1-0002 Schistosoma mansoni cDNA clone MS1-0002T-L205-C06.B, mRNA sequence.    60   3e-05  1
CD137635|CD137635.1 MG1-0048U-A216-G02-U.B MG1-0048 Schistosoma mansoni cDNA clone MG1-0048U-A216-G02.B, mRNA sequence.    60   3e-05  1
AW724145|AW724145.1 f4b06nm.f2 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone f4b06nm 5', mRNA sequence.    58   1e-04  1
AW724144|AW724144.1 f4b06nm.f1 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone f4b06nm 5', mRNA sequence.    58   1e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC150787_5(AC150787|pid:none) Medicago truncatula clone mth2-171...   115   1e-33
AK221273_1(AK221273|pid:none) Arabidopsis thaliana mRNA for DEAD...   115   1e-33
AL662801_3(AL662801|pid:none) Human DNA sequence from clone XXba...   112   5e-33
AK088894_1(AK088894|pid:none) Mus musculus 2 days neonate thymus...   109   2e-32
AL512698_1(AL512698|pid:none) Homo sapiens mRNA; cDNA DKFZp547B1...   104   6e-31
AC145331_10(AC145331|pid:none) Medicago truncatula clone mth2-8o...   107   1e-28
FM992691_22(FM992691|pid:none) Candida dubliniensis CD36 chromos...   124   1e-27
(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   121   9e-27
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   121   9e-27
(Q6BME5) RecName: Full=ATP-dependent RNA helicase SUB2;         ...   120   2e-26

 psg: 0.75  gvh: 0.51  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFD360 is cyt

>CFD360Z.Seq
----------GTACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTT
TTCAGCTACCCTCTCTGATACCATTTCGTCCAATCTGTAAGAAGTTTATGAACAATCCCA
TTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTAC
GTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGAC
TTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATC
CTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGT
ATCGAACAATACCGTAAATTCAAAAACTTTGAATCCTCGTATCATGGTTGCCACTAATAT
CTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGA
ATCT