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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD349
Library CF
(Link to library)
Clone ID CFD349
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15323-1
Original site URL
Representative seq. ID CFD349P
(Link to Original site)
Representative DNA sequence 
>CFD349 (CFD349Q) /CSM/CF/CFD3-C/CFD349Q.Seq.d/
AAAAAAAATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATT
AATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAANGGTNTTTTAGCAGCAGATGAATC
AACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAANCAATGAAGAGAACAG
AAGAGCCTACAGAGAACTTTTAATTGGTNCTGGTAATGGNGTTAACGAATTTATTGGNGG
TNTTATTTTATATGAAGAAACTNTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGA
TGTTTTAAGAGAACAAAAGATTCACATTGGTNTTAAAGTTGATAAGGGTGTTGTNCCAAT
TCCAGGTNCCGATGGTGAAACCTCAACCCAAGGTTTANATGGTCTTGCAGAGCGTTGTAA
GAAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAGXXXXXXXXXXCCAAGAATT
GTCCATCCCAATTATCAATCACTGAAAAATGCACACACATTAGCTCGTTATGCTGCAATT
TGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCTGAAATCTTAATGGATGGTAATCAC
ACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTCAAAGCACTC
AATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCAAATATGGTCGTCAATGGT
ACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAATTCACCGTCCGTACCCTT
CAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGAA
ATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCATGGGCTCTC
TCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATCT
GCCAACGTTGAAGCCGCTCGTAAAGTTTATTTACATCGTGCCAAGTGTAACTCTNCTTGC
TCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCATNCTGAATCATTATATG
TAAAAGATTACAAATATTAAATATATAAAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KKIILYTFFFKMNSKFADELIATAKAIVAPGXGXLAADESTNTIGARFKKINLEXNEENR
RAYRELLIGXGNGVNEFIGGXILYEETXYQKMADGRLFTDVLREQKIHIGXKVDKGVVPI
PGXDGETSTQGLXGLAERCKKYYEAGARFAKWR---

---PRIVHPNYQSLKNAHTLARYAAICQENGLVPIVEPEILMDGNHTVEQSAEVTEKVLA
AVFKALNDHHILLEGALLKPNMVVNGTDCPIKATSEQIGKFTVRTLQRTVPPALTGVVFL
SGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRA
KCNSXCSTR*ihw*ginwfsxlnhym*kitnikyik*
Translated Amino Acid sequence (All Frames) 
Frame A:
kknytiyfff*nef*ic**incnc*sncstr*xxfssr*inqynwssfqkd*frxq*req
kslqrtfnwxw*wx*riywxxyfi*rnxlpkdgrw*iihrcfkrtkdshwx*s**gccxn
srxrw*nlnprfxwscral*eil*srctfrkme---

---PRIVHPNYQSLKNAHTLARYAAICQENGLVPIVEPEILMDGNHTVEQSAEVTEKVLA
AVFKALNDHHILLEGALLKPNMVVNGTDCPIKATSEQIGKFTVRTLQRTVPPALTGVVFL
SGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRA
KCNSXCSTR*ihw*ginwfsxlnhym*kitnikyik*

Frame B:
KKIILYTFFFKMNSKFADELIATAKAIVAPGXGXLAADESTNTIGARFKKINLEXNEENR
RAYRELLIGXGNGVNEFIGGXILYEETXYQKMADGRLFTDVLREQKIHIGXKVDKGVVPI
PGXDGETSTQGLXGLAERCKKYYEAGARFAKWR---

---qelsipiinh*kmhth*lvmlqfvkrmvwsqssnlks*wmvitlssnllkslkkf*l
qfskhsmtiisy*kvpy*nqiwssmvptvqskpplnklvnspsvpfnvlfhqlllvlfsy
lvvklklkplqt*tl*msyqivhglslshtvvpyrplssplgkvnlptlkplvkfiyivp
svtllaqlgkytgeestgsax*iiickrlqilni*nk

Frame C:
kklyyilfflk*ilnllmn*lqllkql*hqvxvf*qqmnqpiqlelvskrli*kxmkrte
eptenf*lvlvmxltnllxvlfymkklftkrwqmvdysqmf*enkrftlvlklirvlxqf
qvpmvkpqpkvxmvlqsvvrntmkqvhvsqnge---

---kncpsqlsitekcthisslccnlsrewfgpnrrt*nlngw*shcraic*sh*ksfsc
sfqstq*psylirrcliktkygrqwyrlsnqshl*tnw*ihrpypstycstssywccfli
wwsn*n*shcklkryecltkssmgslflirscltglchlhler*icqr*srs*slftscq
v*lxllnsvntlvrnqlvqhxeslyvkdyky*iyki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD349 (CFD349Q) /CSM/CF/CFD3-C/CFD349Q.Seq.d/                       2006   0.0
VFJ101 (VFJ101Q) /CSM/VF/VFJ1-A/VFJ101Q.Seq.d/                       1211   0.0
VFI422 (VFI422Q) /CSM/VF/VFI4-A/VFI422Q.Seq.d/                       1211   0.0
VFD501 (VFD501Q) /CSM/VF/VFD5-A/VFD501Q.Seq.d/                       1211   0.0
SFI819 (SFI819Q) /CSM/SF/SFI8-A/SFI819Q.Seq.d/                       1211   0.0
SFI292 (SFI292Q) /CSM/SF/SFI2-D/SFI292Q.Seq.d/                       1211   0.0
SFG307 (SFG307Q) /CSM/SF/SFG3-A/SFG307Q.Seq.d/                       1211   0.0
SFD773 (SFD773Q) /CSM/SF/SFD7-D/SFD773Q.Seq.d/                       1211   0.0
CFH402 (CFH402Q) /CSM/CF/CFH4-A/CFH402Q.Seq.d/                       1211   0.0
CFF463 (CFF463Q) /CSM/CF/CFF4-C/CFF463Q.Seq.d/                       1211   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   993   0.0    5
AF247061|AF247061.1 Plasmodium vinckei fructose 1,6-bisphosphate aldolase gene, partial cds.    54   1e-20  5
BM167314|BM167314.1 EST569837 PyBS Plasmodium yoelii yoelii cDNA clone PYCOH24 5' end, mRNA sequence.    62   2e-18  5
AF247059|AF247059.1 Plasmodium yoelii YM fructose 1,6-bisphosphate aldolase gene, partial cds.    62   7e-18  5
AF247060|AF247060.1 Plasmodium chabaudi AS fructose 1,6-bisphosphate aldolase gene, partial cds.    54   3e-16  4
AF247062|AF247062.1 Plasmodium berghei QIMR fructose 1,6-bisphosphate aldolase gene, partial cds.    62   3e-16  5
M81793|M81793.1 Plasmodium berghei fructosebisphosphate aldolase (ALDO-2) gene, complete cds.    54   1e-12  5
BM162087|BM162087.1 EST564610 PyBS Plasmodium yoelii yoelii cDNA clone PYCKN08 5' end, mRNA sequence.    62   4e-12  4
AF217804|AF217804.1 Cyanidium caldarium fructose-1,6-biphosphate aldolase (Aldo) mRNA, complete cds.    46   8e-11  4
BF297262|BF297262.1 049PbD12 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46   5e-09  4
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86A67) RecName: Full=Fructose-bisphosphate aldolase;          ...   337   e-159
AL162506_11(AL162506|pid:none) Arabidopsis thaliana DNA chromoso...   216   1e-90
AF247060_1(AF247060|pid:none) Plasmodium chabaudi AS fructose 1,...   228   2e-90
AY062566_1(AY062566|pid:none) Arabidopsis thaliana fructose-bisp...   214   4e-90
EF144942_1(EF144942|pid:none) Populus trichocarpa clone WS0111_B...   223   9e-90
AF308587_1(AF308587|pid:none) Fragaria x ananassa cytosolic aldo...   216   1e-89
AM910994_614(AM910994|pid:none) Plasmodium knowlesi strain H chr...   229   2e-89
AF247063_1(AF247063|pid:none) Plasmodium vivax WDK fructose 1,6-...   228   3e-89
DQ874472_1(DQ874472|pid:none) Plasmodium vivax strain A11 fructo...   228   3e-89
AF247059_1(AF247059|pid:none) Plasmodium yoelii YM fructose 1,6-...   224   2e-88
protein update 2009. 5.13
PSORT 

 psg: 0.53  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for CFD349 is nuc
5' end seq. ID CFD349F
5' end seq. 
>CFD349F.Seq
AAAAAAAATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATT
AATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAANGGTNTTTTAGCAGCAGATGAATC
AACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAANCAATGAAGAGAACAG
AAGAGCCTACAGAGAACTTTTAATTGGTNCTGGTAATGGNGTTAACGAATTTATTGGNGG
TNTTATTTTATATGAAGAAACTNTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGA
TGTTTTAAGAGAACAAAAGATTCACATTGGTNTTAAAGTTGATAAGGGTGTTGTNCCAAT
TCCAGGTNCCGATGGTGAAACCTCAACCCAAGGTTTANATGGTCTTGCAGAGCGTTGTAA
GAAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAG----------
Length of 5' end seq. 461
3' end seq. ID CFD349Z
3' end seq. 
>CFD349Z.Seq
----------CCAAGAATTGTCCATCCCAATTATCAATCACTGAAAAATGCACACACATT
AGCTCGTTATGCTGCAATTTGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCTGAAAT
CTTAATGGATGGTAATCACACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGC
TGCAGTTTTCAAAGCACTCAATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACC
AAATATGGTCGTCAATGGTACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAA
ATTCACCGTCCGTACCCTTCAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTT
ATCTGGTGGTCAAACTGAAATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACC
AAATCGTCCATGGGCTCTCTCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTC
CACTTGGAAAGGTGAATCTGCCAACGTTGAAGCCGCTCGTAAAGTTTATTTACATCGTGC
CAAGTGTAACTCTNCTTGCTCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAG
CATNCTGAATCATTATATGTAAAAGATTACAAATATTAAATATATAAAATAAA
Length of 3' end seq. 643
Connected seq. ID CFD349P
Connected seq. 
>CFD349P.Seq
AAAAAAAATTATACTATATACTTTTTTTTTTAAAATGAATTCTAAATTTGCTGATGAATT
AATTGCAACTGCTAAAGCAATTGTAGCACCAGGTAANGGTNTTTTAGCAGCAGATGAATC
AACCAATACAATTGGAGCTCGTTTCAAAAAGATTAATTTAGAAANCAATGAAGAGAACAG
AAGAGCCTACAGAGAACTTTTAATTGGTNCTGGTAATGGNGTTAACGAATTTATTGGNGG
TNTTATTTTATATGAAGAAACTNTTTACCAAAAGATGGCAGATGGTAGATTATTCACAGA
TGTTTTAAGAGAACAAAAGATTCACATTGGTNTTAAAGTTGATAAGGGTGTTGTNCCAAT
TCCAGGTNCCGATGGTGAAACCTCAACCCAAGGTTTANATGGTCTTGCAGAGCGTTGTAA
GAAATACTATGAAGCAGGTGCACGTTTCGCAAAATGGAGAG----------CCAAGAATT
GTCCATCCCAATTATCAATCACTGAAAAATGCACACACATTAGCTCGTTATGCTGCAATT
TGTCAAGAGAATGGTTTGGTCCCAATCGTCGAACCTGAAATCTTAATGGATGGTAATCAC
ACTGTCGAGCAATCTGCTGAAGTCACTGAAAAAGTTTTAGCTGCAGTTTTCAAAGCACTC
AATGACCATCATATCTTATTAGAAGGTGCCTTATTAAAACCAAATATGGTCGTCAATGGT
ACCGACTGTCCAATCAAAGCCACCTCTGAACAAATTGGTAAATTCACCGTCCGTACCCTT
CAACGTACTGTTCCACCAGCTCTTACTGGTGTTGTTTTCTTATCTGGTGGTCAAACTGAA
ATTGAAGCCACTGCAAACTTAAACGCTATGAATGTCTTACCAAATCGTCCATGGGCTCTC
TCTTTCTCATACGGTCGTGCCTTACAGGCCTCTGTCATCTCCACTTGGAAAGGTGAATCT
GCCAACGTTGAAGCCGCTCGTAAAGTTTATTTACATCGTGCCAAGTGTAACTCTNCTTGC
TCAACTCGGTAAATACACTGGTGAGGAATCAACTGGTTCAGCATNCTGAATCATTATATG
TAAAAGATTACAAATATTAAATATATAAAATAAA
Length of connected seq. 1104
Full length Seq ID -
Full length Seq. -
Length of full length seq. -