>CFD348 (CFD348Q) /CSM/CF/CFD3-B/CFD348Q.Seq.d/
XXXXXXXXXXGATGCTGCTAAATGGAATATCGATCTCAACAATTTCTCATTGGTTGGCGA
TAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAATGGACC
TTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCAGGTTC
CTATAAAGAATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTCTGGGA
TGCATACACCAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAATGCAA
AGAATCTGATGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGATGTCCT
CCGTGATGAAGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTAACTCA
CCTAAGAATTCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGT

---AAKWNIDLNNFSLVGDSAGGNMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSY
KEFHNDFYLTKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLR
DEGENFARLLRKANVPVTHLRIQAMVHDFVALNC

Frame A:
---mllngisistishwlaivpvviwllcwg*wqklemdlrsrefvstiqpliav*iqvp
iknsimisillkmv*ngsgmhtptvqktpmkstallpnaknlmswvsqkq*ssmvklmss
vmkvkisldyyvkqmfq*lt*efkqwfmisll*t


Frame B:
---cc*meyrsqqfligwr*crw*ygycvgvdgks*kwtfvqenlsllssh**ryefrfl
*rip**flsy*rwyemvlgcihqqskrhq*nlllsfqmqri*chgfprnndhqw*s*cpp
**r*kfr*tit*skcssnspknssngs*frcskl


Frame C:
---AAKWNIDLNNFSLVGDSAGGNMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSY
KEFHNDFYLTKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLR
DEGENFARLLRKANVPVTHLRIQAMVHDFVALNC

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA271 (VFA271Q) /CSM/VF/VFA2-C/VFA271Q.Seq.d/                        904   0.0
SLE392 (SLE392Q) /CSM/SL/SLE3-D/SLE392Q.Seq.d/                        904   0.0
SFL453 (SFL453Q) /CSM/SF/SFL4-C/SFL453Q.Seq.d/                        904   0.0
SFK657 (SFK657Q) /CSM/SF/SFK6-C/SFK657Q.Seq.d/                        904   0.0
SFK642 (SFK642Q) /CSM/SF/SFK6-B/SFK642Q.Seq.d/                        904   0.0
SFJ270 (SFJ270Q) /CSM/SF/SFJ2-C/SFJ270Q.Seq.d/                        904   0.0
SFI745 (SFI745Q) /CSM/SF/SFI7-B/SFI745Q.Seq.d/                        904   0.0
SFI225 (SFI225Q) /CSM/SF/SFI2-B/SFI225Q.Seq.d/                        904   0.0
SFI144 (SFI144Q) /CSM/SF/SFI1-B/SFI144Q.Seq.d/                        904   0.0
SFH419 (SFH419Q) /CSM/SF/SFH4-A/SFH419Q.Seq.d/                        904   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC068287|AC068287.5 Homo sapiens BAC clone RP11-532L9 from 2, complete sequence.    46   0.44   1
AF262040|AF262040.1 Arabidopsis thaliana BAC T10I18.               44   1.7    1
AC007543|AC007543.4 Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   2.9    5
AC147498|AC147498.8 Medicago truncatula clone mth2-6f18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    32   3.2    2
AC147499|AC147499.5 Medicago truncatula clone mth2-22h5, complete sequence.    32   3.2    2
AC137985|AC137985.17 Medicago truncatula clone mth2-14m10, WORKING DRAFT SEQUENCE, 5 ordered pieces.    32   3.2    2
CG950489|CG950489.1 MBEDK47TFC mth2 Medicago truncatula genomic clone 32H21, genomic survey sequence.    32   4.3    2
BG644990|BG644990.1 EST506609 KV3 Medicago truncatula cDNA clone pKV3-38N16 5' end, mRNA sequence.    32   4.3    2
AC136589|AC136589.1 Homo sapiens chromosome 16 clone CTD-2054F13, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42   6.9    1
AC022168|AC022168.6 Homo sapiens chromosome 16 clone RP11-89D3, complete sequence.    42   6.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000750_1934(CP000750|pid:none) Kineococcus radiotolerans SRS30...   149   2e-35
CP000431_3066(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   141   8e-33
AP009493_770(AP009493|pid:none) Streptomyces griseus subsp. gris...   140   1e-32
AP006618_3275(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   139   2e-32
CP001074_3223(CP001074|pid:none) Rhizobium etli CIAT 652, comple...   138   5e-32
AM238663_1209(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...   136   3e-31
CP000133_3066(CP000133|pid:none) Rhizobium etli CFN 42, complete...   136   3e-31
CP001191_2811(CP001191|pid:none) Rhizobium leguminosarum bv. tri...   135   4e-31
CP000094_3993(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   134   7e-31
CP000826_371(CP000826|pid:none) Serratia proteamaculans 568, com...   134   1e-30

 psg: 0.79  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFD348 is cyt

>CFD348Z.Seq
----------GATGCTGCTAAATGGAATATCGATCTCAACAATTTCTCATTGGTTGGCGA
TAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAATGGACC
TTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCAGGTTC
CTATAAAGAATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTCTGGGA
TGCATACACCAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAATGCAA
AGAATCTGATGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGATGTCCT
CCGTGATGAAGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTAACTCA
CCTAAGAATTCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGT