CFD340
Library CF
(Link to library)
Clone ID CFD340
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12597-1
Original site URL
Representative seq. ID CFD340F
(Link to Original site)
Representative DNA sequence
>CFD340 (CFD340Q) /CSM/CF/CFD3-B/CFD340Q.Seq.d/
ATTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGGGGNCNTTTTTTTNNNGAAAAAAAAAAXXXXXXX
XXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
LIKLFLSFNIYISLEKKKKKKKKKKKKKGXFFXXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
i**nyffhlifi*vwkkkkkkkkkkkkkrgxffxekk---


Frame B:
fnkiisfi*ylykfgkkkkkkkkkkkkkgxxfxxkkk---


Frame C:
LIKLFLSFNIYISLEKKKKKKKKKKKKKGXFFXXKK---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFH342 (SFH342Q) /CSM/SF/SFH3-B/SFH342Q.Seq.d/ 90 8e-18
CHA743 (CHA743Q) /CSM/CH/CHA7-B/CHA743Q.Seq.d/ 90 8e-18
CFJ371 (CFJ371Q) /CSM/CF/CFJ3-C/CFJ371Q.Seq.d/ 90 8e-18
CFG565 (CFG565Q) /CSM/CF/CFG5-C/CFG565Q.Seq.d/ 90 8e-18
CFD340 (CFD340Q) /CSM/CF/CFD3-B/CFD340Q.Seq.d/ 90 8e-18
CFD256 (CFD256Q) /CSM/CF/CFD2-C/CFD256Q.Seq.d/ 90 8e-18
CFH861 (CFH861Q) /CSM/CF/CFH8-C/CFH861Q.Seq.d/ 88 3e-17
SFB536 (SFB536Q) /CSM/SF/SFB5-B/SFB536Q.Seq.d/ 82 2e-15
CHC779 (CHC779Q) /CSM/CH/CHC7-D/CHC779Q.Seq.d/ 82 2e-15
CFK192 (CFK192Q) /CSM/CF/CFK1-D/CFK192Q.Seq.d/ 82 2e-15

own update 2002.11.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX344356|AX344356.1 Sequence 203 from Patent WO0200926. 32 0.005 4
AX251964|AX251964.1 Sequence 225 from Patent WO0168911. 32 0.005 4
BH150344|BH150344.1 ENTQQ03TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.012 2
AL513474|AL513474.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP4-752K2. 38 0.013 3
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 44 0.018 6
AC079054|AC079054.6 Homo sapiens chromosome 8, clone RP11-158A14, complete sequence. 38 0.019 3
AG100541|AG100541.1 Pan troglodytes DNA, clone: PTB-103C11.F. 48 0.026 1
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 0.041 6
AX392737|AX392737.1 Sequence 27 from Patent WO0212526. 34 0.049 5
AL512348|AL512348.8 Human DNA sequence from clone RP11-361M3 on chromosome 1. 38 0.063 3
dna update 2004. 3. 4
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 56,955,439
protein update 2009. 5.13
PSORT

psg: 0.87 gvh: 0.39 alm: 0.49 top: 1.20 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.77 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
8.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for CFD340 is nuc

5' end seq. ID CFD340F
5' end seq.
>CFD340F.Seq
ATTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGGGGNCNTTTTTTTNNNGAAAAAAAAAA-------
---
Length of 5' end seq. 113
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -