CFD333
Library CF
(Link to library)
Clone ID CFD333
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFD333P
(Link to Original site)
Representative DNA sequence
>CFD333 (CFD333Q) /CSM/CF/CFD3-B/CFD333Q.Seq.d/
ATTTTTTNAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCCNCTTTTTTGAAAA
AAAAAAXXXXXXXXXXTTGAGAATTTAAAACAAANATCAANAAAAANAAGGTTTCCACCA
AGATCACCAACGTNTCATTTTCGCTGGTAANCAATTANAAAATGGTCGTACTCTCTCTGA
TTCCAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTCAAAACATTAACTGGTAAAGACCATCACTCTTGAAAGTTGAGGGCTCAGAT
AATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAAT
GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTC
GCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACT
GGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAA
ATTCAAGACAAATAACGNCTCCC
sequence update 2001. 6. 1
Translated Amino Acid sequence
fxnsfllyky*ihilffyil*HFIKKKKKKKXKXSXFLKKK---

---ENLKQXSXKXRFPPRSPTXHFRW*xixkwsysl*fqypkrinsplgpqikrwyanlc
qninw*rpsllkvegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniqke
stlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqd
k*rl


Translated Amino Acid sequence (All Frames)
Frame A:
ifxihfyytnikfifyffiycnis*kkkkkkxlkxplf*kkk---

---lri*nkxqxkxgfhqdhqrxifagxqlxngrtlsdsniqkestlhlvlrlrggmqif
vktltgkdhhs*klraqiilkmlkqrfktkkvshqtnkd*fslvnn*kmvvlslittfkr
nplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspv
nnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfk
tnnxs

Frame B:
ffxfifiiqilnsyfiflyivtfhkkkkkkkx*kxxffekk---

---*efktxixkxkvstkitnvsfslvxnxkmvvlslipiskknqlstwssd*evvcksl
skh*lvktitles*glr*y*kc*nkdsrqrryptrptkinfrw*tirrwsysl*lqhskg
ihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*
tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsr
qitxp

Frame C:
fxnsfllyky*ihilffyil*HFIKKKKKKKXKXSXFLKKK---

---ENLKQXSXKXRFPPRSPTXHFRW*xixkwsysl*fqypkrinsplgpqikrwyanlc
qninw*rpsllkvegsdnienvktkiqdkegippdqqrlifagkqledgrtlsdyniqke
stlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqd
k*rl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD333 (CFD333Q) /CSM/CF/CFD3-B/CFD333Q.Seq.d/ 1358 0.0
CFH492 (CFH492Q) /CSM/CF/CFH4-D/CFH492Q.Seq.d/ 1271 0.0
SFG323 (SFG323Q) /CSM/SF/SFG3-A/SFG323Q.Seq.d/ 1267 0.0
CHD734 (CHD734Q) /CSM/CH/CHD7-B/CHD734Q.Seq.d/ 1267 0.0
CFF890 (CFF890Q) /CSM/CF/CFF8-D/CFF890Q.Seq.d/ 1267 0.0
SFI459 (SFI459Q) /CSM/SF/SFI4-C/SFI459Q.Seq.d/ 1265 0.0
SFI249 (SFI249Q) /CSM/SF/SFI2-C/SFI249Q.Seq.d/ 1263 0.0
SFG568 (SFG568Q) /CSM/SF/SFG5-C/SFG568Q.Seq.d/ 1261 0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/ 1261 0.0
CFF552 (CFF552Q) /CSM/CF/CFF5-C/CFF552Q.Seq.d/ 1261 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1001 0.0 3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 993 0.0 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 993 0.0 3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 617 0.0 2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 597 e-174 4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 585 e-171 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 472 e-170 3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 472 e-170 3
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read. 176 2e-87 4
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read. 192 2e-87 4
dna update 2004. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 333 e-110
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 333 e-110
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 333 e-110
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 329 e-109
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 317 e-106
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 315 e-106
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 315 e-105
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 317 e-105
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 315 e-105
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 315 e-105
protein update 2009. 5.13
PSORT

psg: 0.65 gvh: 0.21 alm: 0.81 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.60 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CFD333 is nuc

5' end seq. ID CFD333F
5' end seq.
>CFD333F.Seq
ATTTTTTNAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCCNCTTTTTTGAAAA
AAAAAA----------
Length of 5' end seq. 126
3' end seq. ID CFD333Z
3' end seq.
>CFD333Z.Seq
----------TTGAGAATTTAAAACAAANATCAANAAAAANAAGGTTTCCACCAAGATCA
CCAACGTNTCATTTTCGCTGGTAANCAATTANAAAATGGTCGTACTCTCTCTGATTCCAA
TATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTT
TGTCAAAACATTAACTGGTAAAGACCATCACTCTTGAAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAATAACGNCTCCC
Length of 3' end seq. 727
Connected seq. ID CFD333P
Connected seq.
>CFD333P.Seq
ATTTTTTNAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATAT
TGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCCNCTTTTTTGAAAA
AAAAAA----------TTGAGAATTTAAAACAAANATCAANAAAAANAAGGTTTCCACCA
AGATCACCAACGTNTCATTTTCGCTGGTAANCAATTANAAAATGGTCGTACTCTCTCTGA
TTCCAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCA
AATCTTTGTCAAAACATTAACTGGTAAAGACCATCACTCTTGAAAGTTGAGGGCTCAGAT
AATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAA
AGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAAT
GTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTC
GCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACT
GGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAA
ATTCAAGACAAATAACGNCTCCC
Length of connected seq. 853
Full length Seq ID -
Full length Seq. -
Length of full length seq. -