>CFD331 (CFD331Q) /CSM/CF/CFD3-B/CFD331Q.Seq.d/
XXXXXXXXXXTAAAGGATGCTGCTAAATGNAATATCGATCTCAACAATTTCTCATTGGTT
GGCGATAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAAT
GGACCTTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCA
GGTTCCTATAAAGAATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTC
TGGGATGCATACACCAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAA
TGCAAAGAATCTGATGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGAT
GTCCTCCGTGATGAAGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTA
ACTCACCTAAGAATTCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGTCTTGATCAA
TCAAAAGCATGTAGAGTTGCAATGGATTCCTCAATTGATTTCTTAAATAAATNCTCATGA
TNCCAAATGCAACTAAACCAAAATGTTGAAAATAATCAATCAATCAATCAATCAATCAA

---KDAAKXNIDLNNFSLVGDSAGGNMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSG
SYKEFHNDFYLTKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADV
LRDEGENFARLLRKANVPVTHLRIQAMVHDFVALNCLDQSKACRVAMDSSIDFLNKXS*x
qmqlnqnvennqsinqsi

Frame A:
---kgcc*mxyrsqqfligwr*crw*ygycvgvdgks*kwtfvqenlsllssh**ryefr
fl*rip**flsy*rwyemvlgcihqqskrhq*nlllsfqmqri*chgfprnndhqw*s*c
pp**r*kfr*tit*skcssnspknssngs*frcskls*siksm*scngfln*flk*xlmx
pnatkpkc*k*sinqsinq


Frame B:
---KDAAKXNIDLNNFSLVGDSAGGNMAIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSG
SYKEFHNDFYLTKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADV
LRDEGENFARLLRKANVPVTHLRIQAMVHDFVALNCLDQSKACRVAMDSSIDFLNKXS*x
qmqlnqnvennqsinqsi


Frame C:
---rmllnxisistishwlaivpvviwllcwg*wqklemdlrsrefvstiqpliav*iqv
piknsimisillkmv*ngsgmhtptvqktpmkstallpnaknlmswvsqkq*ssmvklms
svmkvkisldyyvkqmfq*lt*efkqwfmisll*tvlinqkhvelqwipqlis*inxhdx
kcn*tkmlkiinqsinqs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD331 (CFD331Q) /CSM/CF/CFD3-B/CFD331Q.Seq.d/                       1098   0.0
CFE201 (CFE201Q) /CSM/CF/CFE2-A/CFE201Q.Seq.d/                       1084   0.0
SFK657 (SFK657Q) /CSM/SF/SFK6-C/SFK657Q.Seq.d/                       1078   0.0
SFI225 (SFI225Q) /CSM/SF/SFI2-B/SFI225Q.Seq.d/                       1078   0.0
SFH139 (SFH139Q) /CSM/SF/SFH1-B/SFH139Q.Seq.d/                       1078   0.0
SFD221 (SFD221Q) /CSM/SF/SFD2-A/SFD221Q.Seq.d/                       1078   0.0
SFB211 (SFB211Q) /CSM/SF/SFB2-A/SFB211Q.Seq.d/                       1078   0.0
SFA889 (SFA889Q) /CSM/SF/SFA8-D/SFA889Q.Seq.d/                       1078   0.0
CHQ660 (CHQ660Q) /CSM/CH/CHQ6-C/CHQ660Q.Seq.d/                       1078   0.0
CHD871 (CHD871Q) /CSM/CH/CHD8-C/CHD871Q.Seq.d/                       1078   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC068287|AC068287.5 Homo sapiens BAC clone RP11-532L9 from 2, complete sequence.    46   0.57   1
AX571766|AX571766.1 Sequence 4985 from Patent WO02077021.          32   0.92   11
AF262040|AF262040.1 Arabidopsis thaliana BAC T10I18.               44   2.3    1
AC147498|AC147498.8 Medicago truncatula clone mth2-6f18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    32   4.1    2
AC147499|AC147499.5 Medicago truncatula clone mth2-22h5, complete sequence.    32   4.1    2
AC137985|AC137985.17 Medicago truncatula clone mth2-14m10, WORKING DRAFT SEQUENCE, 5 ordered pieces.    32   4.1    2
AC105841|AC105841.3 Rattus norvegicus clone CH230-36A21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   4.6    8
CG950489|CG950489.1 MBEDK47TFC mth2 Medicago truncatula genomic clone 32H21, genomic survey sequence.    32   5.5    2
BG644990|BG644990.1 EST506609 KV3 Medicago truncatula cDNA clone pKV3-38N16 5' end, mRNA sequence.    32   5.5    2
AC007543|AC007543.4 Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   8.5    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000750_1934(CP000750|pid:none) Kineococcus radiotolerans SRS30...   159   4e-38
(P14326) RecName: Full=Vegetative-specific protein H5;                155   6e-37
AP009493_770(AP009493|pid:none) Streptomyces griseus subsp. gris...   151   1e-35
CP000431_3066(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   146   5e-34
AP006618_3275(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   146   5e-34
CP001074_3223(CP001074|pid:none) Rhizobium etli CIAT 652, comple...   143   4e-33
CR628336_1860(CR628336|pid:none) Legionella pneumophila str. Par...   141   1e-32
CR628337_1860(CR628337|pid:none) Legionella pneumophila str. Len...   141   2e-32
CP000133_3066(CP000133|pid:none) Rhizobium etli CFN 42, complete...   141   2e-32
AE017354_1851(AE017354|pid:none) Legionella pneumophila subsp. p...   140   2e-32

 psg: 0.79  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal

>> prediction for CFD331 is cyt

>CFD331Z.Seq
----------TAAAGGATGCTGCTAAATGNAATATCGATCTCAACAATTTCTCATTGGTT
GGCGATAGTGCCGGTGGTAATATGGCTATTGTGTTGGGGTTGATGGCAAAAGTTAGAAAT
GGACCTTCGTTCAAGAGAATTTGTCTCTACTATCCAGCCATTGATAGCGGTATGAATTCA
GGTTCCTATAAAGAATTCCATAATGATTTCTATCTTACTAAAGATGGTATGAAATGGTTC
TGGGATGCATACACCAACAGTCCAAAAGACACCAATGAAATCTACTGCTCTCCTTCCAAA
TGCAAAGAATCTGATGTCATGGGTTTCCCAGAAACAATGATCATCAATGGTGAAGCTGAT
GTCCTCCGTGATGAAGGTGAAAATTTCGCTAGACTATTACGTAAAGCAAATGTTCCAGTA
ACTCACCTAAGAATTCAAGCAATGGTTCATGATTTCGTTGCTCTAAACTGTCTTGATCAA
TCAAAAGCATGTAGAGTTGCAATGGATTCCTCAATTGATTTCTTAAATAAATNCTCATGA
TNCCAAATGCAACTAAACCAAAATGTTGAAAATAATCAATCAATCAATCAATCAATCAA