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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD319
Library CF
(Link to library)
Clone ID CFD319
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16511-1
Original site URL
Representative seq. ID CFD319Z
(Link to Original site)
Representative DNA sequence 
>CFD319 (CFD319Q) /CSM/CF/CFD3-A/CFD319Q.Seq.d/
XXXXXXXXXXCAAGCTCANCAAGCTCAACAAGCTCAACAAGCTCAACAAAATCAACAAGC
TCAACAAAATCAACAAGCTCAACAAATTCAACAAGCTCAACAAAATCAACAAGCTCAACA
AANTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCA
ACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAACAAAA
TCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCTGC
ACAAAAACAAAGTGAAAACTCTAAACAATCCTGCTGCAATTCAAACTGATGTAAACGTTG
CCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACA
AAGATAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAANCAAA
ATGAAAACAATGTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---AXQAQQAQQAQQNQQAQQNQQAQQIQQAQQNQQAQQXQQAQQNQQAQQNQQAQQNQQ
AQQNPQAQQAQQNQQAQQNQQEKNNNKSILSIEIGNNAAQKQSENSKQSCCNSN*ckrcq
qtkprkqs*srkqs*srkqr*srkw**sse*c*srtkxk*kqc
Translated Amino Acid sequence (All Frames) 
Frame A:
---klxklnklnklnkinklnkinklnkfnklnkinklnkxnklnkinklnkinklnkin
klnkihklnklnktnklnkinkkkttinqf*vlkleimlhknkvktlnnpaaiqtdvnva
nkqnqenkanqenkanqenkdnqengdnqvndanqeqxqnennv


Frame B:
---ssxsstsstsstkstsstkstsstnstsstkstsstxstsstkstsstkstsstkst
sstkstsstsstkptsstkstrkkqq*insky*nwk*cctktk*kl*tillqfklm*tlp
tnktkktklikktklikktkiikkmviik*mmliknkxkmktml


Frame C:
---AXQAQQAQQAQQNQQAQQNQQAQQIQQAQQNQQAQQXQQAQQNQQAQQNQQAQQNQQ
AQQNPQAQQAQQNQQAQQNQQEKNNNKSILSIEIGNNAAQKQSENSKQSCCNSN*ckrcq
qtkprkqs*srkqs*srkqr*srkw**sse*c*srtkxk*kqc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD319 (CFD319Q) /CSM/CF/CFD3-A/CFD319Q.Seq.d/                        470   e-131
CHD296 (CHD296Q) /CSM/CH/CHD2-D/CHD296Q.Seq.d/                        454   e-127
AFI696 (AFI696Q) /CSM/AF/AFI6-D/AFI696Q.Seq.d/                        454   e-127
SFE617 (SFE617Q) /CSM/SF/SFE6-A/SFE617Q.Seq.d/                        448   e-125
SFC142 (SFC142Q) /CSM/SF/SFC1-B/SFC142Q.Seq.d/                        448   e-125
CHR780 (CHR780Q) /CSM/CH/CHR7-D/CHR780Q.Seq.d/                        448   e-125
CHR219 (CHR219Q) /CSM/CH/CHR2-A/CHR219Q.Seq.d/                        448   e-125
CHD705 (CHD705Q) /CSM/CH/CHD7-A/CHD705Q.Seq.d/                        448   e-125
CFK181 (CFK181Q) /CSM/CF/CFK1-D/CFK181Q.Seq.d/                        448   e-125
CFI529 (CFI529Q) /CSM/CF/CFI5-B/CFI529Q.Seq.d/                        448   e-125
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   321   e-122  3
AC099090|AC099090.6 Rattus norvegicus clone CH230-195N10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   0.044  3
BF682181|BF682181.1 602117601T1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone IMAGE:3468576 3', mRNA sequence.    38   0.086  2
CF390442|CF390442.1 RTDR2_19_F09.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_19_F09_A021 5', mRNA sequence.    34   0.089  2
AC101501|AC101501.1 Mus musculus clone RP23-189H23, LOW-PASS SEQUENCE SAMPLING.    48   0.12   1
AL772210|AL772210.8 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-407G17.    48   0.12   1
AC123080|AC123080.5 Rattus norvegicus clone CH230-7G22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    36   0.15   6
AC122276|AC122276.4 Mus musculus BAC clone RP23-230D23 from 6, complete sequence.    40   0.19   5
AL669975|AL669975.9 Mouse DNA sequence from clone RP23-218H24 on chromosome X.    36   0.25   2
AC140866|AC140866.1 Homo sapiens chromosome 5 clone RP11-1099C3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.31   8
dna update 2004. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    42   0.006
protein update 2008.12.25
PSORT 

 psg: 0.75  gvh: 0.24  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for CFD319 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD319Z
3' end seq. 
>CFD319Z.Seq
----------CAAGCTCANCAAGCTCAACAAGCTCAACAAGCTCAACAAAATCAACAAGC
TCAACAAAATCAACAAGCTCAACAAATTCAACAAGCTCAACAAAATCAACAAGCTCAACA
AANTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCA
ACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAACAAAA
TCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCTGC
ACAAAAACAAAGTGAAAACTCTAAACAATCCTGCTGCAATTCAAACTGATGTAAACGTTG
CCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAACA
AAGATAATCAAGAAAATGGTGATAATCAAGTGAATGATGCTAATCAAGAACAAAANCAAA
ATGAAAACAATGTTA
Length of 3' end seq. 485
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -