>CFD318 (CFD318Q) /CSM/CF/CFD3-A/CFD318Q.Seq.d/
TAAATGGCAAAATACACCACAAGGTAGATTATTTGAAGGTCAATTAGATTTATTAACAAA
GAAAGAGGATATGTTAAAAGGTATTACATACACTATTGATGCACAATTATTTGAACCAAC
ATTTTTACAAAAAACTGCATCATTCTTATTATTTGCAACAAATTGGATATTAAAAGTAAT
CAATCCAAAGAATACACCATTACCATTACCATTACCTGCTCCACCACAATTTGCAGCTTT
ACCAGAGTTTTGTATTGAGGATATTGTTGATTTCTTTACTTTTGTTATAACTAATTTTAG
TCAAGTTTTACAATATATTAAATTAGAACAATTAATGAAATTTTTTATTACAATTTTAGC
AACACCAGAATATGTTAAGAATCCATATTTGAAAGCAAAGATTATTGAAATTATTTCACA
ATTTGTACCAAGTAAATATTCAAAAGGTAATCCAATATTGTTAGAGTGTAATCAAGATGT
AAAGGATCATATGGTATTGGCATTAATGAGATTCTATGTGGACATTGAGTTCACTGGTGG
TCATAATCAATTTTATGAAAAGTTTTCATATCGTCATTATAGTAGTTTAATTCTTAAATA
TCTTTGGTCAAXXXXXXXXXX

KWQNTPQGRLFEGQLDLLTKKEDMLKGITYTIDAQLFEPTFLQKTASFLLFATNWILKVI
NPKNTPLPLPLPAPPQFAALPEFCIEDIVDFFTFVITNFSQVLQYIKLEQLMKFFITILA
TPEYVKNPYLKAKIIEIISQFVPSKYSKGNPILLECNQDVKDHMVLALMRFYVDIEFTGG
HNQFYEKFSYRHYSSLILKYLWS---

Frame A:
*makyttr*ii*rsirfinkergyvkryyihy*ctii*tniftknciiliicnkldiksn
qskeytitititcstticsftrvly*gyc*flyfcyn*f*ssftiy*irtineifyynfs
ntric*esifeskdy*nyftictk*ifkr*snivrv*srckgsygigineilcgh*vhww
s*sil*kvfissl**fns*islv---


Frame B:
KWQNTPQGRLFEGQLDLLTKKEDMLKGITYTIDAQLFEPTFLQKTASFLLFATNWILKVI
NPKNTPLPLPLPAPPQFAALPEFCIEDIVDFFTFVITNFSQVLQYIKLEQLMKFFITILA
TPEYVKNPYLKAKIIEIISQFVPSKYSKGNPILLECNQDVKDHMVLALMRFYVDIEFTGG
HNQFYEKFSYRHYSSLILKYLWS---


Frame C:
ngkihhkvdylkvn*iy*qrkric*kvlhtllmhnylnqhfykklhhsyylqqigy*k*s
iqrihhyhyhyllhhnlqlyqsfvlrillisllll*lilvkfyniln*nn**nfllqf*q
hqnmlrihi*kqrllklfhnlyqvniqkviqyc*svikm*riiwywh**dsmwtlsslvv
iinfmksfhiviivv*flnifg---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD318 (CFD318Q) /CSM/CF/CFD3-A/CFD318Q.Seq.d/                       1211   0.0
CHG404 (CHG404Q) /CSM/CH/CHG4-A/CHG404Q.Seq.d/                       1164   0.0
AHD228 (AHD228Q) /CSM/AH/AHD2-B/AHD228Q.Seq.d/                       1112   0.0
SHK880 (SHK880Q) /CSM/SH/SHK8-D/SHK880Q.Seq.d/                       1108   0.0
SFG722 (SFG722Q) /CSM/SF/SFG7-A/SFG722Q.Seq.d/                       1096   0.0
AHA887 (AHA887Q) /CSM/AH/AHA8-D/AHA887Q.Seq.d/                       1080   0.0
AHK419 (AHK419Q) /CSM/AH/AHK4-A/AHK419Q.Seq.d/                       1078   0.0
VHJ855 (VHJ855Q) /CSM/VH/VHJ8-C/VHJ855Q.Seq.d/                       1039   0.0
AFC109 (AFC109Q) /CSM/AF/AFC1-A/AFC109Q.Seq.d/                       1027   0.0
VHO789 (VHO789Q) /CSM/VH/VHO7-D/VHO789Q.Seq.d/                        981   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF044255|AF044255.1 Dictyostelium discoideum NOSA (nosA) mRNA, complete cds.  1203   0.0    1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   3e-07  27
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   1e-06  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   5e-06  15
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    32   4e-05  14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    32   4e-05  18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   4e-05  13
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42   1e-04  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-04  16
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    38   2e-04  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF044255_1(AF044255|pid:none) Dictyostelium discoideum NOSA (nos...   376   e-103
AM920437_1853(AM920437|pid:none) Penicillium chrysogenum Wiscons...   105   8e-22
DQ683066_1(DQ683066|pid:none) Synthetic construct UFD2 (UFD2) ge...   102   1e-20
BC099985_1(BC099985|pid:none) Danio rerio ubiquitination factor ...    95   2e-18
BT059275_1(BT059275|pid:none) Salmo salar clone ssal-rgf-538-035...    94   2e-18
AK122345_1(AK122345|pid:none) Mus musculus mRNA for mKIAA0684 pr...    91   3e-17
AK029914_1(AK029914|pid:none) Mus musculus adult male testis cDN...    91   3e-17
T00358(T00358)hypothetical protein KIAA0684 - human (fragment)         88   2e-16
AK292444_1(AK292444|pid:none) Homo sapiens cDNA FLJ78424 complet...    88   2e-16
AB028839_1(AB028839|pid:none) Homo sapiens HDNB1(homzygously del...    88   2e-16

 psg: 0.67  gvh: 0.39  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFD318 is nuc

>CFD318F.Seq
TAAATGGCAAAATACACCACAAGGTAGATTATTTGAAGGTCAATTAGATTTATTAACAAA
GAAAGAGGATATGTTAAAAGGTATTACATACACTATTGATGCACAATTATTTGAACCAAC
ATTTTTACAAAAAACTGCATCATTCTTATTATTTGCAACAAATTGGATATTAAAAGTAAT
CAATCCAAAGAATACACCATTACCATTACCATTACCTGCTCCACCACAATTTGCAGCTTT
ACCAGAGTTTTGTATTGAGGATATTGTTGATTTCTTTACTTTTGTTATAACTAATTTTAG
TCAAGTTTTACAATATATTAAATTAGAACAATTAATGAAATTTTTTATTACAATTTTAGC
AACACCAGAATATGTTAAGAATCCATATTTGAAAGCAAAGATTATTGAAATTATTTCACA
ATTTGTACCAAGTAAATATTCAAAAGGTAATCCAATATTGTTAGAGTGTAATCAAGATGT
AAAGGATCATATGGTATTGGCATTAATGAGATTCTATGTGGACATTGAGTTCACTGGTGG
TCATAATCAATTTTATGAAAAGTTTTCATATCGTCATTATAGTAGTTTAATTCTTAAATA
TCTTTGGTCAA----------