NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD283
Library CF
(Link to library)
Clone ID CFD283
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10672-1
Original site URL
Representative seq. ID CFD283P
(Link to Original site)
Representative DNA sequence 
>CFD283 (CFD283Q) /CSM/CF/CFD2-D/CFD283Q.Seq.d/
ATTATTATTAGTTAATTTTCATTTGTAAATATAAAAAAAAAATGGAATCATTAAAAAACA
ATGGNGAAAAAATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACA
AAGATTTTAAAGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGT
TTCTTGATAAACATGATGAAGAATTATNCAACAAACAAATAATTCGTTCAAGACTAGAAG
ATAAAATTTCAAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTG
GTTTTCAAACAATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTA
ATATTATGGGTAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACACAAGTAG
AACAAATGATTAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTA
AAAATTTAGGAAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAA
ATGGTATCAAATCAATGAACCATTTAGGTXXXXXXXXXXATTCTGACAATTATCCTCAAG
GTGGTGATCTAATTTATATTAAAAAAGATGGAGTTTATGAACTTAGTCCAAATAAAATAA
CTCATGCCCTTGAAGTTTATTATAGCTCTGGGGGTGGATATGGTGTTAATGACTATCCAA
GTTTTCGTTATGGTGGAAAACCAATCATACCTCTTCTCGCTCCAGTTGGTAATGCTGTGT
TTACAATGTTAAATCCAAATCGTTATAAAAGAACCTTTAAAATTAGAATTGTTCATGTCA
TTGTTAGAGAAGCCAAATGGAATTTAGATTGCTATGATAATCAAGTTGGGGAAGCAGGTT
CATTTAACCAAAATTTTGTTTTCACTTCAACTAATATAGTTTCTGACCCAATTTGTGGGA
ATATTGGAACTGTTGGTATCACTGAAATTCCAGGACCATTTACAACTGATAAAAAGTATA
TTAGATTAACATGCATTCGTAAAGTAAATTTCCCAGCATCAAAAAATGAAGGATATGCCG
TTGGATNCTCGTATTTTATCAGTACAATTAATTGATTTATAACCAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yy*LIFICKYKKKMESLKNNGEKIENFLNQLKNLQSNVDKDFKEFSNSPNTLNAEKDGEF
LDKHDEELXNKQIIRSRLEDKISNLSSSMINDIGNDFQTGFQTILYNLPGVGPVFQMIFN
IMGNGINLEKFYQEIITQVEQMIKKSLEDYYKNQCNTIFKNLGKACDQHKDLTQKWYDKN
GIKSMNHLG---

---SDNYPQGGDLIYIKKDGVYELSPNKITHALEVYYSSGGGYGVNDYPSFRYGGKPIIP
LLAPVGNAVFTMLNPNRYKRTFKIRIVHVIVREAKWNLDCYDNQVGEAGSFNQNFVFTST
NIVSDPICGNIGTVGITEIPGPFTTDKKYIRLTCIRKVNFPASKNEGYAVGXSYFISTIN
*fit
Translated Amino Acid sequence (All Frames) 
Frame A:
iiis*fsfvnikkkwnh*ktmxkklkif*in*kifnqm*tkilknfqilqil*mlkkmes
flinmmknyxtnk*fvqd*kikfqi*vll*lmilgmifklvfkqfytiyqxlvqfsk*sl
ilwvmv*i*knftkkslhk*nk*lknh*kiiiktnviqflki*ekhviniki*lkngmik
mvsnq*ti*---

---iltiilkvvi*filkkmefmnlvqik*lmplkfiialgvdmvlmtiqvfvmvenqsy
lfslqlvmlclqc*iqivikeplklelfmsllekpngi*iamiiklgkqvhltkilfslq
li*fltqfvgilellvslkfqdhlqliksild*hafvk*isqhqkmkdmpldxrilsvql
idl*p

Frame B:
lllvnfhl*i*kkngiikkqwxkn*kffksikkssikcrqrf*rifkfskyfkc*krwrv
s**t**rixqqtnnsfktrr*nfkfkffyd**ywe*fsnwfsnnsiqftrxwssfpndl*
yyg*wykfrkilprnhytsrtnd*kiirrll*kpm*ynf*kfrksm*st*rsnskmv**k
wyqinepfr---

---f*qlssrw*snly*krwsl*t*sk*nnscp*sll*lwgwiwc**lskfslwwktnht
ssrssw*ccvynvksksl*knl*n*ncschc*rsqmefrll**sswgsrfi*pkfcfhfn
*ysf*pnlweywncwyh*nsrtiyn**kvy*inmhs*skfpsikk*ricrwxlvfyqyn*
liynh

Frame C:
yy*LIFICKYKKKMESLKNNGEKIENFLNQLKNLQSNVDKDFKEFSNSPNTLNAEKDGEF
LDKHDEELXNKQIIRSRLEDKISNLSSSMINDIGNDFQTGFQTILYNLPGVGPVFQMIFN
IMGNGINLEKFYQEIITQVEQMIKKSLEDYYKNQCNTIFKNLGKACDQHKDLTQKWYDKN
GIKSMNHLG---

---SDNYPQGGDLIYIKKDGVYELSPNKITHALEVYYSSGGGYGVNDYPSFRYGGKPIIP
LLAPVGNAVFTMLNPNRYKRTFKIRIVHVIVREAKWNLDCYDNQVGEAGSFNQNFVFTST
NIVSDPICGNIGTVGITEIPGPFTTDKKYIRLTCIRKVNFPASKNEGYAVGXSYFISTIN
*fit
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD283 (CFD283Q) /CSM/CF/CFD2-D/CFD283Q.Seq.d/                       1955   0.0
AFA137 (AFA137Q) /CSM/AF/AFA1-B/AFA137Q.Seq.d/                       1078   0.0
SSM776 (SSM776Q) /CSM/SS/SSM7-D/SSM776Q.Seq.d/                       1068   0.0
VFM522 (VFM522Q) /CSM/VF/VFM5-A/VFM522Q.Seq.d/                       1063   0.0
AHB192 (AHB192Q) /CSM/AH/AHB1-D/AHB192Q.Seq.d/                       1063   0.0
AFI828 (AFI828Q) /CSM/AF/AFI8-B/AFI828Q.Seq.d/                       1061   0.0
SFA326 (SFA326Q) /CSM/SF/SFA3-B/SFA326Q.Seq.d/                       1057   0.0
VFL508 (VFL508Q) /CSM/VF/VFL5-A/VFL508Q.Seq.d/                       1053   0.0
VFE687 (VFE687Q) /CSM/VF/VFE6-D/VFE687Q.Seq.d/                       1053   0.0
VFE308 (VFE308Q) /CSM/VF/VFE3-A/VFE308Q.Seq.d/                       1053   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.  1005   0.0    10
M15968|M15968.1 D.discoideum M3R gene, exons 1-3.                 561   0.0    3
M15967|M15967.1 D.discoideum M3L gene, exons 1-3.                 246   e-151  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   2e-10  22
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   9e-08  17
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    30   4e-07  19
AF303741|AF303741.1 Chilo iridescent virus complete genome.        32   1e-06  16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   1e-06  18
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   6e-06  18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   7e-06  21
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P11872) RecName: Full=cAMP-regulated M3R protein; AltName: Full...   358   1e-97
AC117072_17(AC117072|pid:none) Dictyostelium discoideum chromoso...   234   4e-60
AE014187_536(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    51   8e-05
AE014186_384(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.004
CR380952_40(CR380952|pid:none) Candida glabrata strain CBS138 ch...    44   0.013
CP000879_149(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    40   0.11
EF158087_1(EF158087|pid:none) Plasmodium falciparum erythrocyte ...    40   0.14
AF128451_1(AF128451|pid:none) Borrelia turicatae plasmid-encoded...    40   0.14
(O51267) RecName: Full=Leucyl-tRNA synthetase;          EC=6.1.1...    40   0.19
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...    40   0.19
protein update 2009. 5.13
PSORT 

 psg: 0.56  gvh: 0.29  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CFD283 is cyt
5' end seq. ID CFD283F
5' end seq. 
>CFD283F.Seq
ATTATTATTAGTTAATTTTCATTTGTAAATATAAAAAAAAAATGGAATCATTAAAAAACA
ATGGNGAAAAAATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACA
AAGATTTTAAAGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGT
TTCTTGATAAACATGATGAAGAATTATNCAACAAACAAATAATTCGTTCAAGACTAGAAG
ATAAAATTTCAAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTG
GTTTTCAAACAATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTA
ATATTATGGGTAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACACAAGTAG
AACAAATGATTAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTA
AAAATTTAGGAAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAA
ATGGTATCAAATCAATGAACCATTTAGGT----------
Length of 5' end seq. 569
3' end seq. ID CFD283Z
3' end seq. 
>CFD283Z.Seq
----------ATTCTGACAATTATCCTCAAGGTGGTGATCTAATTTATATTAAAAAAGAT
GGAGTTTATGAACTTAGTCCAAATAAAATAACTCATGCCCTTGAAGTTTATTATAGCTCT
GGGGGTGGATATGGTGTTAATGACTATCCAAGTTTTCGTTATGGTGGAAAACCAATCATA
CCTCTTCTCGCTCCAGTTGGTAATGCTGTGTTTACAATGTTAAATCCAAATCGTTATAAA
AGAACCTTTAAAATTAGAATTGTTCATGTCATTGTTAGAGAAGCCAAATGGAATTTAGAT
TGCTATGATAATCAAGTTGGGGAAGCAGGTTCATTTAACCAAAATTTTGTTTTCACTTCA
ACTAATATAGTTTCTGACCCAATTTGTGGGAATATTGGAACTGTTGGTATCACTGAAATT
CCAGGACCATTTACAACTGATAAAAAGTATATTAGATTAACATGCATTCGTAAAGTAAAT
TTCCCAGCATCAAAAAATGAAGGATATGCCGTTGGATNCTCGTATTTTATCAGTACAATT
AATTGATTTATAACCAC
Length of 3' end seq. 547
Connected seq. ID CFD283P
Connected seq. 
>CFD283P.Seq
ATTATTATTAGTTAATTTTCATTTGTAAATATAAAAAAAAAATGGAATCATTAAAAAACA
ATGGNGAAAAAATTGAAAATTTTTTAAATCAATTAAAAAATCTTCAATCAAATGTAGACA
AAGATTTTAAAGAATTTTCAAATTCTCCAAATACTTTAAATGCTGAAAAAGATGGAGAGT
TTCTTGATAAACATGATGAAGAATTATNCAACAAACAAATAATTCGTTCAAGACTAGAAG
ATAAAATTTCAAATTTAAGTTCTTCTATGATTAATGATATTGGGAATGATTTTCAAACTG
GTTTTCAAACAATTCTATACAATTTACCAGGNGTTGGTCCAGTTTTCCAAATGATCTTTA
ATATTATGGGTAATGGTATAAATTTAGAAAAATTTTACCAAGAAATCATTACACAAGTAG
AACAAATGATTAAAAAATCATTAGAAGATTATTATAAAAACCAATGTAATACAATTTTTA
AAAATTTAGGAAAAGCATGTGATCAACATAAAGATCTAACTCAAAAATGGTATGATAAAA
ATGGTATCAAATCAATGAACCATTTAGGT----------ATTCTGACAATTATCCTCAAG
GTGGTGATCTAATTTATATTAAAAAAGATGGAGTTTATGAACTTAGTCCAAATAAAATAA
CTCATGCCCTTGAAGTTTATTATAGCTCTGGGGGTGGATATGGTGTTAATGACTATCCAA
GTTTTCGTTATGGTGGAAAACCAATCATACCTCTTCTCGCTCCAGTTGGTAATGCTGTGT
TTACAATGTTAAATCCAAATCGTTATAAAAGAACCTTTAAAATTAGAATTGTTCATGTCA
TTGTTAGAGAAGCCAAATGGAATTTAGATTGCTATGATAATCAAGTTGGGGAAGCAGGTT
CATTTAACCAAAATTTTGTTTTCACTTCAACTAATATAGTTTCTGACCCAATTTGTGGGA
ATATTGGAACTGTTGGTATCACTGAAATTCCAGGACCATTTACAACTGATAAAAAGTATA
TTAGATTAACATGCATTCGTAAAGTAAATTTCCCAGCATCAAAAAATGAAGGATATGCCG
TTGGATNCTCGTATTTTATCAGTACAATTAATTGATTTATAACCAC
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -