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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD270
Library CF
(Link to library)
Clone ID CFD270
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFD270P
(Link to Original site)
Representative DNA sequence 
>CFD270 (CFD270Q) /CSM/CF/CFD2-C/CFD270Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCNTTTTTTGAAAAAAAAAAX
XXXXXXXXXCAAGANAANGAAGTTTTTCCACCAAAATCAACAACGTTTTCNTTTTCGGTT
GGTAAACATTAAAAANATGNTTGGTACTCTTTTCTAATTCCAATACCCAAAAAAGANTCA
NTCTCTCCNCTTGGTCCTNAGATTAAGAGNTGGTATGCAATTNTTTGTCAAAAACATTAA
CTGGTAAGNCCATCACTCTTGAAGTTGAGGGCTCANATAATATTGANAATGTTAAAACAA
AGATTCAAGACAAAGAAGGTTTCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAAC
AATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTA
TTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGAT
TAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAG
TTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTC
C
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---KXXKFFHQNQQRFXFRLVNIKXMXGTLF*fqypkkxxslxlvlrlrxgmqxfvknin
w*xhhs*s*glx*y*xc*nkdsrqrrfptrptkinfrw*tirrwsysl*lqhskgihspf
spqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tiggw
sysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrrys
Translated Amino Acid sequence (All Frames) 
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkki*kxpffekk---

---qxxevfppksttfsfsvgkh*kxxwysflipipkkxsxsplgpxikxwyaixcqkh*
lvxpsllklraxiilxmlkqrfktkkvshqtnkd*fslvnn*kmvvlslittfkrnplsi
*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrm
vvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvf

Frame B:
nsfllyky*ihilffyil*HFIKKKKKKKFKKXXFLKKK---

---KXXKFFHQNQQRFXFRLVNIKXMXGTLF*fqypkkxxslxlvlrlrxgmqxfvknin
w*xhhs*s*glx*y*xc*nkdsrqrrfptrptkinfrw*tirrwsysl*lqhskgihspf
spqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tiggw
sysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrrys

Frame C:
ihfyytnikfifyffiycnis*kkkkkknlkxpxf*kkk---

---rxxsfstkinnvfxfgw*tlkxxlvlfsnsntqkrxxlsxwsxd*exvcnxlsktlt
gkxitlevegsxnixnvktkiqdkegfppdqqrlifagkqledgrtlsdyniqkestlhl
vlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD270 (CFD270Q) /CSM/CF/CFD2-C/CFD270Q.Seq.d/                       1328   0.0
AFB143 (AFB143Q) /CSM/AF/AFB1-B/AFB143Q.Seq.d/                       1140   0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/                       1130   0.0
CFC877 (CFC877Q) /CSM/CF/CFC8-D/CFC877Q.Seq.d/                       1126   0.0
SFE817 (SFE817Q) /CSM/SF/SFE8-A/SFE817Q.Seq.d/                       1124   0.0
CFF113 (CFF113Q) /CSM/CF/CFF1-A/CFF113Q.Seq.d/                       1124   0.0
VFB344 (VFB344Q) /CSM/VF/VFB3-B/VFB344Q.Seq.d/                       1118   0.0
CHB370 (CHB370Q) /CSM/CH/CHB3-C/CHB370Q.Seq.d/                       1118   0.0
SFG575 (SFG575Q) /CSM/SF/SFG5-D/SFG575Q.Seq.d/                       1116   0.0
CHD648 (CHD648Q) /CSM/CH/CHD6-B/CHD648Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1053   0.0    2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1037   0.0    2
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1037   0.0    2
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   638   e-179  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   622   e-174  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   617   e-172  2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   458   e-133  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   458   e-131  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   151   1e-79  4
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   151   1e-79  4
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   348   9e-97
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   348   9e-97
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   348   9e-97
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   344   1e-95
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   344   2e-93
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   333   4e-92
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   330   2e-91
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   330   2e-91
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   333   2e-91
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   330   2e-91
protein update 2009. 5.12
PSORT 

 psg: 0.59  gvh: 0.25  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.80  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for CFD270 is nuc
5' end seq. ID CFD270F
5' end seq. 
>CFD270F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCNTTTTTTGAAAAAAAAAA-
---------
Length of 5' end seq. 119
3' end seq. ID CFD270Z
3' end seq. 
>CFD270Z.Seq
----------CAAGANAANGAAGTTTTTCCACCAAAATCAACAACGTTTTCNTTTTCGGT
TGGTAAACATTAAAAANATGNTTGGTACTCTTTTCTAATTCCAATACCCAAAAAAGANTC
ANTCTCTCCNCTTGGTCCTNAGATTAAGAGNTGGTATGCAATTNTTTGTCAAAAACATTA
ACTGGTAAGNCCATCACTCTTGAAGTTGAGGGCTCANATAATATTGANAATGTTAAAACA
AAGATTCAAGACAAAGAAGGTTTCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAA
CAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCAT
TTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACT
ATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGAC
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGAT
GGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGA
TTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAA
GTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATT
CC
Length of 3' end seq. 712
Connected seq. ID CFD270P
Connected seq. 
>CFD270P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAATTTAAAAAANCCCNTTTTTTGAAAAAAAAAA-
---------CAAGANAANGAAGTTTTTCCACCAAAATCAACAACGTTTTCNTTTTCGGTT
GGTAAACATTAAAAANATGNTTGGTACTCTTTTCTAATTCCAATACCCAAAAAAGANTCA
NTCTCTCCNCTTGGTCCTNAGATTAAGAGNTGGTATGCAATTNTTTGTCAAAAACATTAA
CTGGTAAGNCCATCACTCTTGAAGTTGAGGGCTCANATAATATTGANAATGTTAAAACAA
AGATTCAAGACAAAGAAGGTTTCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAAC
AATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTA
TTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGAT
TAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAG
TTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTC
C
Length of connected seq. 831
Full length Seq ID -
Full length Seq. -
Length of full length seq. -