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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD267
Library CF
(Link to library)
Clone ID CFD267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16241-1
Original site URL
Representative seq. ID CFD267P
(Link to Original site)
Representative DNA sequence 
>CFD267 (CFD267Q) /CSM/CF/CFD2-C/CFD267Q.Seq.d/
AAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAAAGTAAA
AAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCTCACGTT
AATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGGAAAAAT
TACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCTTATTCC
AGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTCACCATA
TTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGGATCAAT
TTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATATGATGA
AAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTTCATATT
GTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACCAATCGA
TGATCAAAATGTAAAGGATTGGATCAATGATGAAGTACTCAATCAAAATGCTATTGAATC
ATCGGTACTTTTTGCTATTTCATGTTTGACAGTATTGGGTTTCTTGGTXXXXXXXXXXTT
CGGCTTGCGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCGATATCATTCTCA
CCAAATTGGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCA
TTTATTCTTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATA
TGTTTGAATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTAT
TAATGTTAAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTA
TGTATGGTGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCAC
CAACAGATCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTA
TTTCTTTCTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTT
TAGGTTTAGCTGTTTCAATATTTAAAAGAAGACCATNCTGCTGNCTTAAGTTATNC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
knkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKI
TTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQISPYSISQRTEGVKMLYYILYGSI
LGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFFILFTIILLVVGAFVRPGSKPID
DQNVKDWINDEVLNQNAIESSVLFAISCLTVLGFL---

---SACGFLSTYPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFL
WINMFEFGYRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCT
INAPTDLCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPXCXLK
LX
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*kklyikflfiyk*nkskkknvshfsrvdsicrcsshvnciklfys*illr*t*kwkn
ynnhfsnwtyintfmcyayss*yfkcfnnvt**wytnftifnlskn*rc*nvilyiiwin
frsftnfsticifls*ri**kysnmfkslcrm*iynifhivynyiigcwcic*tri*tnr
*skckgldq**stqskcy*iigtfcyfmfdsigflg---

---fglrfpfnlstieksiryhshqigpifpiglyhywwfnifhlflyfiwyh*nwy*if
md*yv*iwis*nfptrfitcisvinvk*fmfkyanckfstkicyvwcsslfewyfsytmy
n*ctnrslyyvrnwsfnftysiryfflwycillwylgnccnfyfrfscfni*kktxllx*
vx

Frame B:
knkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKI
TTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQISPYSISQRTEGVKMLYYILYGSI
LGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFFILFTIILLVVGAFVRPGSKPID
DQNVKDWINDEVLNQNAIESSVLFAISCLTVLGFL---

---SACGFLSTYPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFL
WINMFEFGYRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCT
INAPTDLCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPXCXLK
LX

Frame C:
kikktlykiliyi*ikqk*kkecfpfq*gg*hlqvffsr*lh*iil*lnitqinmkvekl
qqsfq*ldlh*hfyvlclfqlif*mfqqchivmvhkfhhiqslkelkvlkcyiiyymdqf
*efh*f*yhlhifimknmmkifqhvqefmqdvnlqyfsyclqlyywllvhlldqdlnqsm
ikm*rigsmmkysikmllnhryfllfhv*qywvsw---

---rlavsfqlihn*kihsisfspnwphishwiisllvv*yfsfilvlylvslelvldfy
gliclnldivklshkvyylhqcy*c*viyv*ickl*i*hqdmlcmvlksi*mvlqlyhvq
lmhqqifvlcqklvf*lhvfn*vflslvlyfimvlg*llqllf*v*lfqylkedhxaxls
y
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD267 (CFD267Q) /CSM/CF/CFD2-C/CFD267Q.Seq.d/                       2167   0.0
CFG150 (CFG150Q) /CSM/CF/CFG1-C/CFG150Q.Seq.d/                       1154   0.0
AFB315 (AFB315Q) /CSM/AF/AFB3-A/AFB315Q.Seq.d/                       1152   0.0
CFI671 (CFI671Q) /CSM/CF/CFI6-C/CFI671Q.Seq.d/                       1146   0.0
SFD558 (SFD558Q) /CSM/SF/SFD5-C/SFD558Q.Seq.d/                       1144   0.0
AFB840 (AFB840Q) /CSM/AF/AFB8-B/AFB840Q.Seq.d/                       1144   0.0
CFC628 (CFC628Q) /CSM/CF/CFC6-B/CFC628Q.Seq.d/                       1102   0.0
AFC356 (AFC356Q) /CSM/AF/AFC3-C/AFC356Q.Seq.d/                       1094   0.0
SFJ506 (SFJ506Q) /CSM/SF/SFJ5-A/SFJ506Q.Seq.d/                       1068   0.0
VFA118 (VFA118Q) /CSM/VF/VFA1-A/VFA118Q.Seq.d/                       1053   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   5e-08  25
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    34   1e-07  17
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    34   5e-07  17
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   1e-06  23
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   1e-06  23
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   2e-06  14
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    34   3e-06  15
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   8e-06  14
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   1e-05  17
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    34   2e-05  19
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;...   357   4e-97
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter;      100   1e-19
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;...    92   4e-17
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ...    91   1e-16
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;...    90   1e-16
(Q3SYY9) RecName: Full=Probable lysosomal cobalamin transporter;...    89   3e-16
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;...    89   4e-16
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;...    85   4e-15
AY093598_1(AY093598|pid:none) Rattus norvegicus p53-related prot...    85   6e-15
BC044020_1(BC044020|pid:none) Xenopus laevis Probable lysosomal ...    84   1e-14
protein update 2009. 5.12
PSORT 

 psg: 0.58  gvh: 0.58  alm: 0.11  top: 0.23  tms: 0.60  mit: 0.33  mip: 0.04
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: plasma membrane
	 40.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for CFD267 is pla
5' end seq. ID CFD267F
5' end seq. 
>CFD267F.Seq
AAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAAAGTAAA
AAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCTCACGTT
AATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGGAAAAAT
TACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCTTATTCC
AGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTCACCATA
TTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGGATCAAT
TTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATATGATGA
AAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTTCATATT
GTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACCAATCGA
TGATCAAAATGTAAAGGATTGGATCAATGATGAAGTACTCAATCAAAATGCTATTGAATC
ATCGGTACTTTTTGCTATTTCATGTTTGACAGTATTGGGTTTCTTGGT----------
Length of 5' end seq. 648
3' end seq. ID CFD267Z
3' end seq. 
>CFD267Z.Seq
----------TTCGGCTTGCGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCG
ATATCATTCTCACCAAATTGGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTT
TAATATTTTTCATTTATTCTTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTT
TATGGATTAATATGTTTGAATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTG
CATCAGTGTTATTAATGTTAAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCAC
CAAGATATGTTATGTATGGTGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTA
CAATTAATGCACCAACAGATCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTA
TTCAATTAGGTATTTCTTTCTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTG
CAACTTTTATTTTAGGTTTAGCTGTTTCAATATTTAAAAGAAGACCATNCTGCTGNCTTA
AGTTATNC
Length of 3' end seq. 538
Connected seq. ID CFD267P
Connected seq. 
>CFD267P.Seq
AAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAAAGTAAA
AAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCTCACGTT
AATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGGAAAAAT
TACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCTTATTCC
AGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTCACCATA
TTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGGATCAAT
TTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATATGATGA
AAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTTCATATT
GTTTACAATTATATTATTGGTTGTTGGTGCATTTGTTAGACCAGGATCTAAACCAATCGA
TGATCAAAATGTAAAGGATTGGATCAATGATGAAGTACTCAATCAAAATGCTATTGAATC
ATCGGTACTTTTTGCTATTTCATGTTTGACAGTATTGGGTTTCTTGGT----------TT
CGGCTTGCGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCGATATCATTCTCA
CCAAATTGGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCA
TTTATTCTTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATA
TGTTTGAATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTAT
TAATGTTAAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTA
TGTATGGTGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCAC
CAACAGATCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTA
TTTCTTTCTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTT
TAGGTTTAGCTGTTTCAATATTTAAAAGAAGACCATNCTGCTGNCTTAAGTTATNC
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -