>CFD266 (CFD266Q) /CSM/CF/CFD2-C/CFD266Q.Seq.d/
AACTCACTCTCATACTACAAACAAACAAATAGGTCACTCACTCCAAAATCCAACAGAAGG
AAATAAAATTTAGTTGTAGTTTGGTTAGATTAGTTTAGTTTAGTAGTAGTAGTAGTAGCG
CCACAGTAATAATATAATAATAAAGCAGCAGCAGCAGCAACAATAATAACAACAAAAGTA
TAATAAAAACAATGTACCAAAATGCATTAAATCATACAAATTCAGGTTATGGAGGAATGA
AAGCAGAGGAGAAAACCAATTATCTTAATCAATCCGTAATTACAGGTTATATTAAAGGTA
TTTCATCCTACATTCCAAGTAGTATTAAATCATCAATAAAGAAACAAATTATGAATTCAC
CTGTAACATTTGAAGAAAAAGATACTATAGTTGGTACTTATTTTGATGAATGTTTTATTC
AAGGTGAAAAACATAAAATTTTAATAAATTGTTATAATAATGGTTTTCAAGTTTGGGATT
TAAATCATACAGATGGAGTTAAGGAATTGTTATCATGTAGAGATGGACTTACAAAATTTT
GTAAGGTTTTAACAAATCCTTTAGAACCTGATAATGAATCATCATCATTTTATGGTAAAA
GACCATTATTAGCTGTTGTTTCAGGTGAAGATAATCXXXXXXXXXX

ltlilqtnk*vthskiqqkeikfscslvrlv*fssssssatvii***SSSSSNNNNNKSI
IKTMYQNALNHTNSGYGGMKAEEKTNYLNQSVITGYIKGISSYIPSSIKSSIKKQIMNSP
VTFEEKDTIVGTYFDECFIQGEKHKILINCYNNGFQVWDLNHTDGVKELLSCRDGLTKFC
KVLTNPLEPDNESSSFYGKRPLLAVVSGEDN---

Frame A:
nslsyykqtnrsltpksnrrk*nlvvvwld*fslvvvvvapq**ynnkaaaaatiittkv
**kqctkmh*iiqiqvmee*kqrrkpiilinp*lqvilkvfhptfqvvlnhq*rnkl*ih
l*hlkkkil*lvlilmnvlfkvknikf**iviimvfkfgi*iiqmelrncyhvemdlqnf
vrf*qil*nlimnhhhfmvkdhy*llfqvki---


Frame B:
thshttnkqighslqnptegnki*l*fg*islv******rhsnniiikqqqqqq**qqky
nknnvpkciksykfrlwrnesrgenqls*sirnyrly*ryfilhsk*y*iinketnyeft
cni*rkryyswylf**mfysr*kt*nfnkll**wfsslgfksyrws*givim*rwtykil
*gfnksfrt***iiiilw*ktiisccfr*r*---


Frame C:
ltlilqtnk*vthskiqqkeikfscslvrlv*fssssssatvii***SSSSSNNNNNKSI
IKTMYQNALNHTNSGYGGMKAEEKTNYLNQSVITGYIKGISSYIPSSIKSSIKKQIMNSP
VTFEEKDTIVGTYFDECFIQGEKHKILINCYNNGFQVWDLNHTDGVKELLSCRDGLTKFC
KVLTNPLEPDNESSSFYGKRPLLAVVSGEDN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD266 (CFD266Q) /CSM/CF/CFD2-C/CFD266Q.Seq.d/                        926   0.0
CHG185 (CHG185Q) /CSM/CH/CHG1-D/CHG185Q.Seq.d/                        539   e-152
FCL-AC26 (FCL-AC26Q) /CSM/FCL/FCL-AC/FCL-AC26Q.Seq.d/                  42   0.010
CFF181 (CFF181Q) /CSM/CF/CFF1-D/CFF181Q.Seq.d/                         40   0.041
VFN104 (VFN104Q) /CSM/VF/VFN1-A/VFN104Q.Seq.d/                         38   0.16
SFL249 (SFL249Q) /CSM/SF/SFL2-C/SFL249Q.Seq.d/                         38   0.16
CFJ368 (CFJ368Q) /CSM/CF/CFJ3-C/CFJ368Q.Seq.d/                         38   0.16
CFI522 (CFI522Q) /CSM/CF/CFI5-A/CFI522Q.Seq.d/                         38   0.16
CFI415 (CFI415Q) /CSM/CF/CFI4-A/CFI415Q.Seq.d/                         38   0.16
VSK281 (VSK281Q) /CSM/VS/VSK2-D/VSK281Q.Seq.d/                         36   0.64

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   517   0.0    6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   7e-07  25
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   0.001  19
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.001  13
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    34   0.003  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.004  14
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    34   0.005  12
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  36   0.005  12
AE014310|AE014310.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 7 of 11 of the complete sequence.    42   0.012  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.025  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008207_2743(AP008207|pid:none) Oryza sativa (japonica cultivar...    58   2e-07
AK101857_1(AK101857|pid:none) Oryza sativa Japonica Group cDNA c...    58   2e-07
AM480810_1(AM480810|pid:none) Vitis vinifera contig VV78X228641....    56   7e-07
AB022214_9(AB022214|pid:none) Arabidopsis thaliana genomic DNA, ...    56   7e-07
AC104708_8(AC104708|pid:none) Oryza sativa (japonica cultivar-gr...    52   2e-05
AK072244_1(AK072244|pid:none) Oryza sativa Japonica Group cDNA c...    52   2e-05
T16475(T16475) hypothetical protein F56C9.10 - Caenorhabditis el...    48   2e-04
U00063_10(U00063|pid:none) Caenorhabditis elegans cosmid F56C9, ...    48   2e-04
BT002410_1(BT002410|pid:none) Arabidopsis thaliana Unknown prote...    43   0.009
AC174299_4(AC174299|pid:none) Medicago truncatula clone mth2-80e...    42   0.019

 psg: 0.73  gvh: 0.26  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CFD266 is cyt

>CFD266F.Seq
AACTCACTCTCATACTACAAACAAACAAATAGGTCACTCACTCCAAAATCCAACAGAAGG
AAATAAAATTTAGTTGTAGTTTGGTTAGATTAGTTTAGTTTAGTAGTAGTAGTAGTAGCG
CCACAGTAATAATATAATAATAAAGCAGCAGCAGCAGCAACAATAATAACAACAAAAGTA
TAATAAAAACAATGTACCAAAATGCATTAAATCATACAAATTCAGGTTATGGAGGAATGA
AAGCAGAGGAGAAAACCAATTATCTTAATCAATCCGTAATTACAGGTTATATTAAAGGTA
TTTCATCCTACATTCCAAGTAGTATTAAATCATCAATAAAGAAACAAATTATGAATTCAC
CTGTAACATTTGAAGAAAAAGATACTATAGTTGGTACTTATTTTGATGAATGTTTTATTC
AAGGTGAAAAACATAAAATTTTAATAAATTGTTATAATAATGGTTTTCAAGTTTGGGATT
TAAATCATACAGATGGAGTTAAGGAATTGTTATCATGTAGAGATGGACTTACAAAATTTT
GTAAGGTTTTAACAAATCCTTTAGAACCTGATAATGAATCATCATCATTTTATGGTAAAA
GACCATTATTAGCTGTTGTTTCAGGTGAAGATAATC----------