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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD257
Library CF
(Link to library)
Clone ID CFD257
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11472-1
Original site URL
Representative seq. ID CFD257P
(Link to Original site)
Representative DNA sequence 
>CFD257 (CFD257Q) /CSM/CF/CFD2-C/CFD257Q.Seq.d/
ACAAATAAATAATTATAATTATACAATGAATATCCTTCAAGTCAATGTTATTGAAGGTAG
AGATCTTGTTGCAAGTGATTCAAATGGATTTTCAGATTGTTATGCAACATTAATATTAGG
ACAACAAAAAAAGAAAACTAAAATTATAAAGAAATCATTGAATCCAAAATGGGGTGAAAC
TTTTTTAATGCGTATATCACCATTGGATGAGACTTTACATGTGTTATTACAAGATTGGGA
TCAATTTAGTAGTGATGATTTCATGGGTGAATGTTTTATTGATATAAATTCATTGGATGA
TACAGCAGTATGGTACACATTATCTACACGTCCAAATAAACCAGACGATTTCGTAAAGGG
AGAAGTTTGTATAAAAGCACGTGTTGTTAAATCATCAAATATAGTTAAAGATAAAATCCC
ATTGAATATGTTAACTGAGGTTAATAATCGTTGTACCAAATTTGAAAATAGTGATGGCAA
AGACCCATTCGATATCTCTGGTATTGGTCTTGAACAATTCCCAGATTTCCTTTTTGATCA
TGTCCCAAATGTTCAAGATATCGATTTAGGTTTCAATCAATTTAAAATGTTTCCATCTTT
AATCTCTTTTAAAAAATTAACAACTCTAGTTCTXXXXXXXXXXAGACCTAAAATGGGTAA
AATTAAAAATCAAAATACTTCGTTGCGTTTCAATTCAAGAGGGTGTTGGTATTGCAAATA
TATTTAAACAAATTAAACCTGAAATTGAAAAATTAAAATTATTAATTCCTCCAAATTATC
CAATGCCACCACCAGCTTCAAATATGTCTGGAGGTAAAACTTTTTCTGGTAATGATAAAT
TAGAACAACTAAAAGATTTAGTTGCAATCTCAATTGATGACTATGATGTATTGTTTGCTG
TATTATATCAGTTAATACCAAATAACACTGATCCTCAATTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
QINNYNYTMNILQVNVIEGRDLVASDSNGFSDCYATLILGQQKKKTKIIKKSLNPKWGET
FLMRISPLDETLHVLLQDWDQFSSDDFMGECFIDINSLDDTAVWYTLSTRPNKPDDFVKG
EVCIKARVVKSSNIVKDKIPLNMLTEVNNRCTKFENSDGKDPFDISGIGLEQFPDFLFDH
VPNVQDIDLGFNQFKMFPSLISFKKLTTLV---

---DLKWVKLKIKILRCVSIQEGVGIANIFKQIKPEIEKLKLLIPPNYPMPPPASNMSGG
KTFSGNDKLEQLKDLVAISIDDYDVLFAVLYQLIPNNTDPQL
Translated Amino Acid sequence (All Frames) 
Frame A:
tnk*l*lyneypssqcy*r*rscck*fkwifrllcninirttkken*nykeiieskmg*n
ffnayitig*dftcvitrlgsi****fhg*mfy*ykfig*yssmvhiiytsk*trrfrkg
rslykstcc*iikys*r*npieyvn*g**slyqi*k**wqrpirylwyws*tiprfpf*s
cpkcsryrfrfqsi*nvsifnlf*kinnsss---

---rpkmgkiknqntslrfnsrgcwyckyi*tn*t*n*kikiinssklsnattsfkyvwr
*nffw***irttkrfscnln**l*civcciisvntk*h*ssi

Frame B:
QINNYNYTMNILQVNVIEGRDLVASDSNGFSDCYATLILGQQKKKTKIIKKSLNPKWGET
FLMRISPLDETLHVLLQDWDQFSSDDFMGECFIDINSLDDTAVWYTLSTRPNKPDDFVKG
EVCIKARVVKSSNIVKDKIPLNMLTEVNNRCTKFENSDGKDPFDISGIGLEQFPDFLFDH
VPNVQDIDLGFNQFKMFPSLISFKKLTTLV---

---DLKWVKLKIKILRCVSIQEGVGIANIFKQIKPEIEKLKLLIPPNYPMPPPASNMSGG
KTFSGNDKLEQLKDLVAISIDDYDVLFAVLYQLIPNNTDPQL

Frame C:
k*iiiiiq*isfksmllkveillqviqmdfqivmqh*y*dnkkrklkl*rnh*iqngvkl
f*cvyhhwmrlymcyykiginlvvmiswvnvlli*ihwmiqqygthylhvqinqtis*re
kfv*khvllnhqi*lkiksh*ic*lrliivvpnlkivmakthsislvlvlnnsqisflim
sqmfkisi*vsinlkcfhl*sllkn*ql*f---

---t*ng*n*kskyfvafqfkrvlvlqiylnklnlklkn*ny*flqiiqchhqlqiclev
klflvmin*nn*ki*lqsqlmtmmycllyyis*yqitliln*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD257 (CFD257Q) /CSM/CF/CFD2-C/CFD257Q.Seq.d/                       1304   0.0
AFG240 (AFG240Q) /CSM/AF/AFG2-B/AFG240Q.Seq.d/                       1213   0.0
CFI169 (CFI169Q) /CSM/CF/CFI1-C/CFI169Q.Seq.d/                       1195   0.0
AFN635 (AFN635Q) /CSM/AF/AFN6-B/AFN635Q.Seq.d/                       1152   0.0
AFK604 (AFK604Q) /CSM/AF/AFK6-A/AFK604Q.Seq.d/                       1074   0.0
SSG376 (SSG376Q) /CSM/SS/SSG3-D/SSG376Q.Seq.d/                       1057   0.0
SFA504 (SFA504Q) /CSM/SF/SFA5-A/SFA504Q.Seq.d/                       1057   0.0
AHM467 (AHM467Q) /CSM/AH/AHM4-C/AHM467Q.Seq.d/                       1043   0.0
AFN470 (AFN470Q) /CSM/AF/AFN4-C/AFN470Q.Seq.d/                        989   0.0
AFD490 (AFD490Q) /CSM/AF/AFD4-D/AFD490Q.Seq.d/                        900   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-05  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   2e-05  24
AL139076|AL139076.2 Campylobacter jejuni NCTC11168 complete genome; segment 3/6.    42   2e-05  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   5e-05  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   2e-04  15
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         32   2e-04  16
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    32   6e-04  11
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    34   7e-04  13
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.001  15
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    34   0.001  13
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E86165(E86165)F15K9.2 protein - Arabidopsis thaliana                   75   4e-12
AC005278_2(AC005278|pid:none) Arabidopsis thaliana chromosome 1 ...    75   4e-12
AC004082_1(AC004082|pid:none) Homo sapiens PAC clone RP5-897G10 ...    73   2e-11
BC108289_1(BC108289|pid:none) Homo sapiens piccolo (presynaptic ...    73   2e-11
BC001304_1(BC001304|pid:none) Homo sapiens piccolo (presynaptic ...    73   2e-11
(Q9Y6V0) RecName: Full=Protein piccolo; AltName: Full=Aczonin;         73   2e-11
(Q9JKS6) RecName: Full=Protein piccolo; AltName: Full=Aczonin; A...    69   2e-10
AF138789_1(AF138789|pid:none) Rattus norvegicus multidomain pres...    69   2e-10
AC013483_28(AC013483|pid:none) Arabidopsis thaliana chromosome I...    69   3e-10
(Q8L7A4) RecName: Full=Probable ADP-ribosylation factor GTPase-a...    69   3e-10
protein update 2009. 5.12
PSORT 

 psg: 0.79  gvh: 0.44  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CFD257 is cyt
5' end seq. ID CFD257F
5' end seq. 
>CFD257F.Seq
ACAAATAAATAATTATAATTATACAATGAATATCCTTCAAGTCAATGTTATTGAAGGTAG
AGATCTTGTTGCAAGTGATTCAAATGGATTTTCAGATTGTTATGCAACATTAATATTAGG
ACAACAAAAAAAGAAAACTAAAATTATAAAGAAATCATTGAATCCAAAATGGGGTGAAAC
TTTTTTAATGCGTATATCACCATTGGATGAGACTTTACATGTGTTATTACAAGATTGGGA
TCAATTTAGTAGTGATGATTTCATGGGTGAATGTTTTATTGATATAAATTCATTGGATGA
TACAGCAGTATGGTACACATTATCTACACGTCCAAATAAACCAGACGATTTCGTAAAGGG
AGAAGTTTGTATAAAAGCACGTGTTGTTAAATCATCAAATATAGTTAAAGATAAAATCCC
ATTGAATATGTTAACTGAGGTTAATAATCGTTGTACCAAATTTGAAAATAGTGATGGCAA
AGACCCATTCGATATCTCTGGTATTGGTCTTGAACAATTCCCAGATTTCCTTTTTGATCA
TGTCCCAAATGTTCAAGATATCGATTTAGGTTTCAATCAATTTAAAATGTTTCCATCTTT
AATCTCTTTTAAAAAATTAACAACTCTAGTTCT----------
Length of 5' end seq. 633
3' end seq. ID CFD257Z
3' end seq. 
>CFD257Z.Seq
----------AGACCTAAAATGGGTAAAATTAAAAATCAAAATACTTCGTTGCGTTTCAA
TTCAAGAGGGTGTTGGTATTGCAAATATATTTAAACAAATTAAACCTGAAATTGAAAAAT
TAAAATTATTAATTCCTCCAAATTATCCAATGCCACCACCAGCTTCAAATATGTCTGGAG
GTAAAACTTTTTCTGGTAATGATAAATTAGAACAACTAAAAGATTTAGTTGCAATCTCAA
TTGATGACTATGATGTATTGTTTGCTGTATTATATCAGTTAATACCAAATAACACTGATC
CTCAATTAA
Length of 3' end seq. 299
Connected seq. ID CFD257P
Connected seq. 
>CFD257P.Seq
ACAAATAAATAATTATAATTATACAATGAATATCCTTCAAGTCAATGTTATTGAAGGTAG
AGATCTTGTTGCAAGTGATTCAAATGGATTTTCAGATTGTTATGCAACATTAATATTAGG
ACAACAAAAAAAGAAAACTAAAATTATAAAGAAATCATTGAATCCAAAATGGGGTGAAAC
TTTTTTAATGCGTATATCACCATTGGATGAGACTTTACATGTGTTATTACAAGATTGGGA
TCAATTTAGTAGTGATGATTTCATGGGTGAATGTTTTATTGATATAAATTCATTGGATGA
TACAGCAGTATGGTACACATTATCTACACGTCCAAATAAACCAGACGATTTCGTAAAGGG
AGAAGTTTGTATAAAAGCACGTGTTGTTAAATCATCAAATATAGTTAAAGATAAAATCCC
ATTGAATATGTTAACTGAGGTTAATAATCGTTGTACCAAATTTGAAAATAGTGATGGCAA
AGACCCATTCGATATCTCTGGTATTGGTCTTGAACAATTCCCAGATTTCCTTTTTGATCA
TGTCCCAAATGTTCAAGATATCGATTTAGGTTTCAATCAATTTAAAATGTTTCCATCTTT
AATCTCTTTTAAAAAATTAACAACTCTAGTTCT----------AGACCTAAAATGGGTAA
AATTAAAAATCAAAATACTTCGTTGCGTTTCAATTCAAGAGGGTGTTGGTATTGCAAATA
TATTTAAACAAATTAAACCTGAAATTGAAAAATTAAAATTATTAATTCCTCCAAATTATC
CAATGCCACCACCAGCTTCAAATATGTCTGGAGGTAAAACTTTTTCTGGTAATGATAAAT
TAGAACAACTAAAAGATTTAGTTGCAATCTCAATTGATGACTATGATGTATTGTTTGCTG
TATTATATCAGTTAATACCAAATAACACTGATCCTCAATTAA
Length of connected seq. 932
Full length Seq ID -
Full length Seq. -
Length of full length seq. -