CFD256
Library CF
(Link to library)
Clone ID CFD256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12597-1|Contig-U16287-1
Original site URL
Representative seq. ID CFD256P
(Link to Original site)
Representative DNA sequence
>CFD256 (CFD256Q) /CSM/CF/CFD2-C/CFD256Q.Seq.d/
ATTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAAXXXXXXXXXX
TTGTTTGGGATTTTAGACTACCACGTGTTAAGTCAATTAATGGCTCTGGTCATAAATTTG
GTCTATCTCCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAG
GATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTC
TCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGT
GGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTT
AAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTNCCAGGTGCATG
TTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTNCTTTGACCTTTCAGATAGAA
TGAGAAATAGAGAGTTGGCAAATTGCATNCCTATACTNCTACCAAACTTACCAGATATTA
GTAGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
LIKLFLSFNIYISLEKKKKKKKKKKKKXGXFFXXKK---

---LFGILDYHVLSQLMALVINLVYLPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFS
LNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALX
RCMLEIEKRCKSKIQSXLTFQIE*eieswqiaxlyxyqtyqilvv


Translated Amino Acid sequence (All Frames)
Frame A:
i**nyffhlifi*vwkkkkkkkkkkkkkxgxffxxk---

---LFGILDYHVLSQLMALVINLVYLPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFS
LNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALX
RCMLEIEKRCKSKIQSXLTFQIE*eieswqiaxlyxyqtyqilvv

Frame B:
fnkiisfi*ylykfgkkkkkkkkkkkkkxxxffxkk---

---clgf*tttc*vn*wlws*iwsishwelagsygevkmtftriwysmstilvaicqhfh
*ishvqvvk*yastitfcamvvvdipqfiklv*imvfsfpsklkntvflilfmmvlvhxp
gacwklkkdakvkfnll*pfr*nek*rvgklhxytxtkltry**

Frame C:
LIKLFLSFNIYISLEKKKKKKKKKKKKXGXFFXXKK---

---vwdfrlprvksingsghkfglspigswlgrmer*k*hsqgfgircqlswwqyanifi
efltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfqas*ktryf*ycl*wywctxq
vhvgn*kkmqk*nsixfdlsdrmrnrelancxpillpnlpdiss

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD256 (CFD256Q) /CSM/CF/CFD2-C/CFD256Q.Seq.d/ 940 0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/ 846 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 846 0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/ 846 0.0
SFK692 (SFK692Q) /CSM/SF/SFK6-D/SFK692Q.Seq.d/ 846 0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/ 846 0.0
SFJ796 (SFJ796Q) /CSM/SF/SFJ7-D/SFJ796Q.Seq.d/ 846 0.0
SFJ789 (SFJ789Q) /CSM/SF/SFJ7-D/SFJ789Q.Seq.d/ 846 0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/ 846 0.0
SFI324 (SFI324Q) /CSM/SF/SFI3-A/SFI324Q.Seq.d/ 846 0.0

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 0.020 11
BH148333|BH148333.1 ENTQG27TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, genomic survey sequence. 40 0.097 2
AG100541|AG100541.1 Pan troglodytes DNA, clone: PTB-103C11.F. 48 0.15 1
AP001538|AP001538.1 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B853K11, LL56-APP region. 32 0.25 8
BX000989|BX000989.10 Mouse DNA sequence from clone RP23-33D17 on chromosome 4. 32 0.27 10
AL132862|AL132862.1 Caenorhabditis elegans YAC Y73F8A. 34 0.29 9
AC147672|AC147672.2 Pan troglodytes chromosome x clone CH251-58K21, WORKING DRAFT SEQUENCE, 9 unordered pieces. 40 0.30 4
AC102801|AC102801.2 Homo sapiens chromosome 8, clone RP11-960P16, complete sequence. 36 0.32 3
BH150344|BH150344.1 ENTQQ03TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 36 0.35 2
AL513474|AL513474.7 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP4-752K2. 38 0.36 6
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 146 1e-43
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 145 3e-43
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 141 2e-42
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 136 2e-40
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 136 2e-40
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 137 2e-39
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 124 4e-39
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 129 3e-38
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 128 4e-38
CP000937_903(CP000937|pid:none) Francisella philomiragia subsp. ... 124 5e-37
protein update 2009. 5.12
PSORT

psg: 0.87 gvh: 0.41 alm: 0.29 top: 0.47 tms: 0.07 mit: 0.19 mip: 0.12
nuc: 0.36 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFD256 is cyt

5' end seq. ID CFD256F
5' end seq.
>CFD256F.Seq
ATTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAA----------
Length of 5' end seq. 110
3' end seq. ID CFD256Z
3' end seq.
>CFD256Z.Seq
----------TTGTTTGGGATTTTAGACTACCACGTGTTAAGTCAATTAATGGCTCTGGT
CATAAATTTGGTCTATCTCCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGA
CATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTC
ATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCA
TGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTC
CAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTNC
CAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTNCTTTGACCTT
TCAGATAGAATGAGAAATAGAGAGTTGGCAAATTGCATNCCTATACTNCTACCAAACTTA
CCAGATATTAGTAGTT
Length of 3' end seq. 486
Connected seq. ID CFD256P
Connected seq.
>CFD256P.Seq
ATTTAATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAA----------
TTGTTTGGGATTTTAGACTACCACGTGTTAAGTCAATTAATGGCTCTGGTCATAAATTTG
GTCTATCTCCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAG
GATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTC
TCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGT
GGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTT
AAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTNCCAGGTGCATG
TTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTNCTTTGACCTTTCAGATAGAA
TGAGAAATAGAGAGTTGGCAAATTGCATNCCTATACTNCTACCAAACTTACCAGATATTA
GTAGTT
Length of connected seq. 596
Full length Seq ID -
Full length Seq. -
Length of full length seq. -