CFD249
Library CF
(Link to library)
Clone ID CFD249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFD249P
(Link to Original site)
Representative DNA sequence
>CFD249 (CFD249Q) /CSM/CF/CFD2-C/CFD249Q.Seq.d/
AATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAAT
AATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATT
TATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTA
TAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACC
ATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTAC
CAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCC
ACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCT
TTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAA
TTCAATCCATTCAAGCCCATTTGGAAACTGTAXXXXXXXXXXATACCCACAAAGACCATC
TCGTGAAGAATTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGCCATAAGAAG
AAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGCA
ACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTT
CCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCC
ATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATT
CTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACAT
CAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGG
TGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGA
TGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTNCTATAGAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
IIVKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNY
RFYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICP
QWPARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNC---

---YPQRPSREEFQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEE
SRKHKSTIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLS
SKGKRTLNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPL
QRXL*k


Translated Amino Acid sequence (All Frames)
Frame A:
nns*nlffycfkyff*neknniifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl
*il*ttrrwflipkr*ihktipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlp
tmaskkpcdcikswyr*flpfskndircsrrsksrcilpkfnpfkpiwkl---

---iptktis*riskrrktkrsrrtshkkketk**vs*iakrkrkrtnat*yrekscsrr
vqkt*inhfpiyyerw*igkrilkcklgsifkegg*il*n*tntwkcfil*mcnwiqlfi
k*rqknpqhqhfrf*rnhfkyss*plnqr*knstlnfirtih*fiiy**w*fiqyn*rst
skixie

Frame B:
IIVKIFFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNY
RFYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICP
QWPARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNC---

---YPQRPSREEFQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEE
SRKHKSTIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLS
SKGKRTLNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPL
QRXL*k

Frame C:
**lksffllf*ifflk*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqeti
dfmnnkamvsyskevnsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfah
ngqqetmrlh*elvplvstflqk*hqmlpqiqvkmysskiqsiqahletv---

---thkdhlvknfkekkdkeikknkp*eerdkmmsilnckekkkenkcnvi*reklqqks
peninqpfsnil*emvnwkensqvqvgvhiqrrrlnimkldqylemfyslnvqldpivyq
vkakepststf*vlkksfqilklts*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhf
kdxyrk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD249 (CFD249Q) /CSM/CF/CFD2-C/CFD249Q.Seq.d/ 928 0.0
CFE280 (CFE280Q) /CSM/CF/CFE2-D/CFE280Q.Seq.d/ 926 0.0
CFD557 (CFD557Q) /CSM/CF/CFD5-C/CFD557Q.Seq.d/ 926 0.0
CFD163 (CFD163Q) /CSM/CF/CFD1-C/CFD163Q.Seq.d/ 926 0.0
CFD554 (CFD554Q) /CSM/CF/CFD5-C/CFD554Q.Seq.d/ 918 0.0
SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/ 916 0.0
SLE641 (SLE641Q) /CSM/SL/SLE6-B/SLE641Q.Seq.d/ 916 0.0
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/ 916 0.0
SFJ389 (SFJ389Q) /CSM/SF/SFJ3-D/SFJ389Q.Seq.d/ 916 0.0
SFJ341 (SFJ341Q) /CSM/SF/SFJ3-B/SFJ341Q.Seq.d/ 916 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***. 34 0.009 9
AC141714|AC141714.1 Apis mellifera clone CH224-57G22, *** SEQUENCING IN PROGRESS ***, 54 unordered pieces. 34 0.029 7
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 32 0.046 11
AC034154|AC034154.6 Homo sapiens BAC clone RP11-242D9 from 4, complete sequence. 36 0.056 11
AC106527|AC106527.4 Rattus norvegicus clone CH230-26E17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 36 0.057 9
AC006529|AC006529.1 Homo sapiens clone SCb-20L24 from 7q31, complete sequence. 50 0.067 1
AL583890|AL583890.13 Mouse DNA sequence from clone RP23-212F17 on chromosome 3. 50 0.067 1
AC135836|AC135836.2 Papio anubis clone RP41-251K4, WORKING DRAFT SEQUENCE, 4 ordered pieces. 50 0.067 1
AC116436|AC116436.2 Pan troglodytes clone RP43-55P4, WORKING DRAFT SEQUENCE, 4 ordered pieces. 50 0.067 1
AC080017|AC080017.8 Mus musculus 3 BAC RP23-170H11 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence. 50 0.067 1
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.061
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 41 0.079
AF124332_1(AF124332|pid:none) Danio rerio double-stranded RNA-sp... 37 1.1
AF506894_1(AF506894|pid:none) Papaya ringspot virus isolate THW-... 35 3.3
AY839864_1(AY839864|pid:none) Papaya ringspot virus isolate PRSV... 34 9.7

protein update 2009. 5.12
PSORT

psg: 0.94 gvh: 0.72 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.13 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vacuolar

>> prediction for CFD249 is exc

5' end seq. ID CFD249F
5' end seq.
>CFD249F.Seq
AATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAAT
AATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATT
TATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTA
TAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACC
ATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTAC
CAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCC
ACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCT
TTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAA
TTCAATCCATTCAAGCCCATTTGGAAACTGTA----------
Length of 5' end seq. 512
3' end seq. ID CFD249Z
3' end seq.
>CFD249Z.Seq
----------ATACCCACAAAGACCATCTCGTGAAGAATTTCAAAGAGAAGAAAGACAAA
GAGATCAAGAAGAACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGC
AAAGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAG
AGTCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAA
GAGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAA
CTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTAT
CAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAA
ATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAAC
CATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCAC
TTCAAAGATTNCTATAGAAAA
Length of 3' end seq. 551
Connected seq. ID CFD249P
Connected seq.
>CFD249P.Seq
AATAATAGTTAAAATCTTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAAT
AATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATT
TATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTA
TAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACC
ATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTAC
CAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCC
ACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCT
TTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAA
TTCAATCCATTCAAGCCCATTTGGAAACTGTA----------ATACCCACAAAGACCATC
TCGTGAAGAATTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGCCATAAGAAG
AAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAACAAATGCA
ACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCAACCATTTT
CCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAGTTGGGGTCC
ATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAATGTTTTATT
CTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACCCTCAACAT
CAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTAACCAAAGG
TGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTTATTGATGA
TGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTNCTATAGAAAA
Length of connected seq. 1063
Full length Seq ID -
Full length Seq. -
Length of full length seq. -