CFD247
Library CF
(Link to library)
Clone ID CFD247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16273-1
Original site URL
Representative seq. ID CFD247P
(Link to Original site)
Representative DNA sequence
>CFD247 (CFD247Q) /CSM/CF/CFD2-B/CFD247Q.Seq.d/
AATTTTTGAAAAAATACAATTTATCGTATTATCAAAAACCAAACCACATTAAATTTAATA
TTTATAAATCAACAAACATATATACAAAAAATAATGTCAGCACAAATGTTTGAATCATTC
AAGGTTAATTCACCAAATGTTAAATATACAGATGAACATATTATTTCCGATTATACTTAT
CAAACTACCAAAGTTCAAAATGTTAATGGTGAATTAATTGTTGAACCAGTTGATCAAAAA
TATATTTTCAAGACTGAACCTAAAGTTCCAAGAATGGGTGTTATGATTGTTGGTTTATGT
GGTAACAATGGTACAACAGTAGTTGGTGGTGTTATTGCCAATCGTGAAGGTTTATGTTGG
AATACCAAACAAGGTCTTCAAACACCAAACTATTTTGGTTCAGTTGTTATGTCCTCAACC
ATTAGAATGGGTATGGATGAAAATGGTTGTGATGCCTACATTCCATTAAAGAACTTAATC
CCAATGGTTCATCCAAACGATATTGTTTTCGGTGGTTGGGATATTAACAATGCCCNCTTA
GCTGATGCCATGCAACGTGCTCAAGTTTTTGACTATGATTTACAAGTTCAATTGATTCCA
CACATGAAAAACATCACTCCACTXXXXXXXXXXTGAATATACCTCACAAATCTTTATGGG
TGGTCACAATACAATCGTTCTCCACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAAT
TATTTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGA
TGATGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATTATCATACCTCCTTAAAGC
ACCAATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCAT
AGAAAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAATAACATGTTATTAGAACA
AAGATTATAAATAATACAAACAATTTCAATAATAATAACATTTATTTAAAAAATAACTNC
CATTTATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
nf*KNTIYRIIKNQTTLNLIFINQQTYIQKIMSAQMFESFKVNSPNVKYTDEHIISDYTY
QTTKVQNVNGELIVEPVDQKYIFKTEPKVPRMGVMIVGLCGNNGTTVVGGVIANREGLCW
NTKQGLQTPNYFGSVVMSSTIRMGMDENGCDAYIPLKNLIPMVHPNDIVFGGWDINNAXL
ADAMQRAQVFDYDLQVQLIPHMKNITP---

---EYTSQIFMGGHNTIVLHNTCEDSLLAAPIILDLVILAEVTSRITMKKQDDDQFATFH
PVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQRL*iiqti
siiitfi*kitxiy


Translated Amino Acid sequence (All Frames)
Frame A:
nf*KNTIYRIIKNQTTLNLIFINQQTYIQKIMSAQMFESFKVNSPNVKYTDEHIISDYTY
QTTKVQNVNGELIVEPVDQKYIFKTEPKVPRMGVMIVGLCGNNGTTVVGGVIANREGLCW
NTKQGLQTPNYFGSVVMSSTIRMGMDENGCDAYIPLKNLIPMVHPNDIVFGGWDINNAXL
ADAMQRAQVFDYDLQVQLIPHMKNITP---

---*iyltnlygwsqynrspqhl*rffisrsnyfrfsysc*sy*syhnektr**sicyfp
ssfiiiiipp*stncsktcyrckctlqtkslhrkylqsmrwyrsr**hvirtkiinntnn
fnnnniylknnxhl*

Frame B:
ifekiqfivlsktkph*i*yl*inkhiykk*cqhkclnhsrlihqmlniqmnilfpiili
klpkfkmlmvn*llnqliknifsrlnlkfqewvl*llvyvvtmvqq*lvvllpivkvyvg
ipnkvfkhqtilvqllcpqplewvwmkmvvmptfh*rt*sqwfiqtilfsvvgiltmpx*
lmpcnvlkfltmiykfn*fht*ktslh---

---EYTSQIFMGGHNTIVLHNTCEDSLLAAPIILDLVILAEVTSRITMKKQDDDQFATFH
PVLSLLSYLLKAPIVPKHATVVNALFKQRACIENIFKACVGIAPDNNMLLEQRL*iiqti
siiitfi*kitxiy

Frame C:
flkkynlsyyqkpnhikfniykstniytknnvstnv*iiqg*ftkc*iyr*tyyfrlyls
nyqsskc*w*inc*ts*skiyfqd*t*sskngcydcwfmw*qwynsswwcycqs*rfmle
yqtrssntklfwfscyvlnh*ngyg*kwl*clhsikelnpngsskrycfrwlgy*qcpls
*chatcssf*l*ftssidsthekhhst---

---niphkslwvvtiqsfsttlvkily*plqlf*i*lfllkllvvsq*knkmminlllsi
qfyhyyhtslkhqlfqnmlpl*mhssnkepa*kisskhalvslqiitcy*nkdyk*ykqf
q***hlfkk*lpfi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD247 (CFD247Q) /CSM/CF/CFD2-B/CFD247Q.Seq.d/ 1968 0.0
VFN230 (VFN230Q) /CSM/VF/VFN2-B/VFN230Q.Seq.d/ 1197 0.0
VFE292 (VFE292Q) /CSM/VF/VFE2-D/VFE292Q.Seq.d/ 1197 0.0
CFF859 (CFF859Q) /CSM/CF/CFF8-C/CFF859Q.Seq.d/ 1191 0.0
VFC157 (VFC157Q) /CSM/VF/VFC1-C/VFC157Q.Seq.d/ 1189 0.0
AFH809 (AFH809Q) /CSM/AF/AFH8-A/AFH809Q.Seq.d/ 1189 0.0
VFF168 (VFF168Q) /CSM/VF/VFF1-C/VFF168Q.Seq.d/ 1178 0.0
AFN463 (AFN463Q) /CSM/AF/AFN4-C/AFN463Q.Seq.d/ 1178 0.0
CFE365 (CFE365Q) /CSM/CF/CFE3-C/CFE365Q.Seq.d/ 1172 0.0
AFM721 (AFM721Q) /CSM/AF/AFM7-A/AFM721Q.Seq.d/ 1140 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

E17392|E17392.1 gDNA encoding inositol-1-phosphate synthase. 58 1e-10 3
E13612|E13612.1 gDNA encoding inositol-1-phosphate synthase. 58 1e-10 3
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 36 3e-09 17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 3e-08 22
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 40 3e-08 17
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P3. 36 3e-07 17
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 3e-07 21
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 38 4e-07 21
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 9e-07 15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 2e-06 21
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q96348) RecName: Full=Inositol-3-phosphate synthase; E... 177 4e-43
(P42802) RecName: Full=Inositol-3-phosphate synthase; E... 177 5e-43
U04876_1(U04876|pid:none) Arabidopsis thaliana Columbia myo-inos... 177 7e-43
(Q41107) RecName: Full=Inositol-3-phosphate synthase; E... 177 7e-43
DQ323907_1(DQ323907|pid:none) Glycine max myo-inositol-1-phospha... 173 1e-41
FJ429173_1(FJ429173|pid:none) Brassica napus myo-inositol 1-phos... 172 1e-41
(Q9S7U0) RecName: Full=Inositol-3-phosphate synthase; E... 172 1e-41
EF676807_1(EF676807|pid:none) Picea sitchensis clone WS02753_D20... 172 1e-41
FJ429170_1(FJ429170|pid:none) Brassica napus myo-inositol 1-phos... 172 1e-41
BT070727_1(BT070727|pid:none) Picea sitchensis clone WS02747_C10... 172 1e-41
protein update 2009. 5.12
PSORT

psg: 0.89 gvh: 0.29 alm: 0.26 top: 0.73 tms: 0.07 mit: 0.47 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.23 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFD247 is nuc

5' end seq. ID CFD247F
5' end seq.
>CFD247F.Seq
AATTTTTGAAAAAATACAATTTATCGTATTATCAAAAACCAAACCACATTAAATTTAATA
TTTATAAATCAACAAACATATATACAAAAAATAATGTCAGCACAAATGTTTGAATCATTC
AAGGTTAATTCACCAAATGTTAAATATACAGATGAACATATTATTTCCGATTATACTTAT
CAAACTACCAAAGTTCAAAATGTTAATGGTGAATTAATTGTTGAACCAGTTGATCAAAAA
TATATTTTCAAGACTGAACCTAAAGTTCCAAGAATGGGTGTTATGATTGTTGGTTTATGT
GGTAACAATGGTACAACAGTAGTTGGTGGTGTTATTGCCAATCGTGAAGGTTTATGTTGG
AATACCAAACAAGGTCTTCAAACACCAAACTATTTTGGTTCAGTTGTTATGTCCTCAACC
ATTAGAATGGGTATGGATGAAAATGGTTGTGATGCCTACATTCCATTAAAGAACTTAATC
CCAATGGTTCATCCAAACGATATTGTTTTCGGTGGTTGGGATATTAACAATGCCCNCTTA
GCTGATGCCATGCAACGTGCTCAAGTTTTTGACTATGATTTACAAGTTCAATTGATTCCA
CACATGAAAAACATCACTCCACT----------
Length of 5' end seq. 623
3' end seq. ID CFD247Z
3' end seq.
>CFD247Z.Seq
----------TGAATATACCTCACAAATCTTTATGGGTGGTCACAATACAATCGTTCTCC
ACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAATTATTTTAGATTTAGTTATTCTTG
CTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGATGATGATCAATTTGCTACTTTCC
ATCCAGTTTTATCATTATTATCATACCTCCTTAAAGCACCAATTGTTCCAAAACATGCTA
CCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCATAGAAAATATCTTCAAAGCATGCG
TTGGTATCGCTCCAGATAATAACATGTTATTAGAACAAAGATTATAAATAATACAAACAA
TTTCAATAATAATAACATTTATTTAAAAAATAACTNCCATTTATAA
Length of 3' end seq. 396
Connected seq. ID CFD247P
Connected seq.
>CFD247P.Seq
AATTTTTGAAAAAATACAATTTATCGTATTATCAAAAACCAAACCACATTAAATTTAATA
TTTATAAATCAACAAACATATATACAAAAAATAATGTCAGCACAAATGTTTGAATCATTC
AAGGTTAATTCACCAAATGTTAAATATACAGATGAACATATTATTTCCGATTATACTTAT
CAAACTACCAAAGTTCAAAATGTTAATGGTGAATTAATTGTTGAACCAGTTGATCAAAAA
TATATTTTCAAGACTGAACCTAAAGTTCCAAGAATGGGTGTTATGATTGTTGGTTTATGT
GGTAACAATGGTACAACAGTAGTTGGTGGTGTTATTGCCAATCGTGAAGGTTTATGTTGG
AATACCAAACAAGGTCTTCAAACACCAAACTATTTTGGTTCAGTTGTTATGTCCTCAACC
ATTAGAATGGGTATGGATGAAAATGGTTGTGATGCCTACATTCCATTAAAGAACTTAATC
CCAATGGTTCATCCAAACGATATTGTTTTCGGTGGTTGGGATATTAACAATGCCCNCTTA
GCTGATGCCATGCAACGTGCTCAAGTTTTTGACTATGATTTACAAGTTCAATTGATTCCA
CACATGAAAAACATCACTCCACT----------TGAATATACCTCACAAATCTTTATGGG
TGGTCACAATACAATCGTTCTCCACAACACTTGTGAAGATTCTTTATTAGCCGCTCCAAT
TATTTTAGATTTAGTTATTCTTGCTGAAGTTACTAGTCGTATCACAATGAAAAAACAAGA
TGATGATCAATTTGCTACTTTCCATCCAGTTTTATCATTATTATCATACCTCCTTAAAGC
ACCAATTGTTCCAAAACATGCTACCGTTGTAAATGCACTCTTCAAACAAAGAGCCTGCAT
AGAAAATATCTTCAAAGCATGCGTTGGTATCGCTCCAGATAATAACATGTTATTAGAACA
AAGATTATAAATAATACAAACAATTTCAATAATAATAACATTTATTTAAAAAATAACTNC
CATTTATAA
Length of connected seq. 1019
Full length Seq ID -
Full length Seq. -
Length of full length seq. -