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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD244
Library CF
(Link to library)
Clone ID CFD244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16511-1
Original site URL
Representative seq. ID CFD244P
(Link to Original site)
Representative DNA sequence 
>CFD244 (CFD244Q) /CSM/CF/CFD2-B/CFD244Q.Seq.d/
AAAAAAATAAATTAAATTATTAATAAAATGAGATTACTTAAAGCTTTATTAGTAGGTTGT
TTGGCTGTGAATGTAGCTTGTGCCACTACTGATGTTAAATTACAAAAATGGTTTGAAAAT
ATTGACCAAACTCAATTGAATCCATATCAACAATCAATCTATAATAGATTGGCATCAATG
GAAGAATACGTTGATGAATGGAAGAACATGTTCCATTTAATGGTCCTTGATGAAAATCAT
AATGAACAAAATCCAGAATGGTCAATCGTTAATAAAAAATGGAATGAAGGTTACAATTAT
GAAAATGAACAAGAAAATAACTTGGATAAAGAAATTAAACAAATTGAAGCCACTCATAAT
TTCCAAGATCTAGAAATGGAACTTAATCAAGAAAATCAAGAAAACAATCAAGAAAACAAT
CAAGAAAAAAACCAAGAAAACAATCAAGAAAAAAACCAAGAAAACAATCAAGAAAACAAT
CAAGAAAACAATCAAGAAAATAAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAA
AAACAAGAACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAA
GAAGTGAATGAAAAACAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTG
AACGAAAAACAAGAAGTGAATGAAAAXXXXXXXXXXCANAATGAAAACCAAGAAGTGAAT
GAAAACCAAGAAGTGAATGAAAACCAAGAAGTGAATGAAAANCAAGAATTGAATGAAAAA
CAAGAAGTGAATGAAAAACAAGAAGTGAACGAAAAACAAGAAGTGAATGAAAANCAAGAA
CAAAATGAAAAACAAGAAATAAACCAAGAACAATTGAGTCAACAAAAGAATGAACAACAA
GAAAAATTGAATCAACAAAATAATCAACAACAAGAAGAGTTGAATAAACAAAATAACCAA
AAACAAAATAGTAACAAATCAATTTTAAACATTGAAGTTGGTTTGGGTCAACAAAATCAA
CAACAAAATCAACAAAATCAACAACAACAACAAAATCAACAAGAAAATCAACAACAAAAA
AATCAACAACAAGCTCAACAAAACCAACAACAAAATCAACAAGCTCAACAAGCTCAACAA
GCTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAA
CAAGCTCAACAAAATCAACAAGCTCAACAAAATGAAAAACAAGAAGTGAATGAAAAACAA
GAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAATTGAATGAAAAACAANAAGTG
AATGAAAAACAANAAGTGAACNAAAAACAANAAGTGAATGAAAAAACAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kkin*IINKMRLLKALLVGCLAVNVACATTDVKLQKWFENIDQTQLNPYQQSIYNRLASM
EEYVDEWKNMFHLMVLDENHNEQNPEWSIVNKKWNEGYNYENEQENNLDKEIKQIEATHN
FQDLEMELNQENQENNQENNQEKNQENNQEKNQENNQENNQENNQENKNNQSKIQQEQNE
KQEQNEKQEVNEKQEVNEKQEVNEKQELNEKQEVNEKQEVNEKQEVNE---

---XNENQEVNENQEVNENQEVNEXQELNEKQEVNEKQEVNEKQEVNEXQEQNEKQEINQ
EQLSQQKNEQQEKLNQQNNQQQEELNKQNNQKQNSNKSILNIEVGLGQQNQQQNQQNQQQ
QQNQQENQQQKNQQQAQQNQQQNQQAQQAQQAQQAQQNQQAQQNQQAQQNQQAQQNQQAQ
QNEKQEVNEKQEVNEKQEVNEKQELNEKQXVNEKQXVNXKQXVNEKT
Translated Amino Acid sequence (All Frames) 
Frame A:
kkin*IINKMRLLKALLVGCLAVNVACATTDVKLQKWFENIDQTQLNPYQQSIYNRLASM
EEYVDEWKNMFHLMVLDENHNEQNPEWSIVNKKWNEGYNYENEQENNLDKEIKQIEATHN
FQDLEMELNQENQENNQENNQEKNQENNQEKNQENNQENNQENNQENKNNQSKIQQEQNE
KQEQNEKQEVNEKQEVNEKQEVNEKQELNEKQEVNEKQEVNEKQEVNE---

---XNENQEVNENQEVNENQEVNEXQELNEKQEVNEKQEVNEKQEVNEXQEQNEKQEINQ
EQLSQQKNEQQEKLNQQNNQQQEELNKQNNQKQNSNKSILNIEVGLGQQNQQQNQQNQQQ
QQNQQENQQQKNQQQAQQNQQQNQQAQQAQQAQQAQQNQQAQQNQQAQQNQQAQQNQQAQ
QNEKQEVNEKQEVNEKQEVNEKQELNEKQXVNEKQXVNXKQXVNEKT

Frame B:
kk*ikllik*dylkly**vvwl*m*lvpllmlnyknglkiltkln*ihinnqsiidwhqw
kntlmngrtcsi*wslmkiimnkiqngqslikngmkvtimkmnkkitwikklnklkplii
ski*kwnlikkikktikktikkktkktikkktkktikktikktikkikiikakfnknkmk
nknkmknkk*mknkk*mknkk*mknkn*mknkk*mknkk*tknkk*mk---

---xmktkk*mktkk*mktkk*mkxkn*mknkk*mknkk*tknkk*mkxknkmknkk*tk
nn*vnkrmnnkkn*inkiinnkks*inkitknkivtnqf*tlklvwvnkinnkinkinnn
nkinkkinnkkinnklnktnnkinklnklnklnklnkinklnkinklnkinklnkinkln
kmknkk*mknkk*mknkk*mknkn*mknxk*mknxk*tknxk*mkkq

Frame C:
knklny**neit*sfisrlfgcecslchy*c*itkmv*ky*pnsiesistinl**iging
rir**meehvpfngp**ks**tksrmvnr**kme*rlql*k*trk*lg*rn*tn*shs*f
prsrngt*srksrkqsrkqsrkkprkqsrkkprkqsrkqsrkqsrk*k*skqnstrtk*k
trtk*ktrse*ktrse*ktrse*ktrie*ktrse*ktrserktrse*k---

---x*kprse*kprse*kprse*kxrie*ktrse*ktrserktrse*kxrtk*ktrnkpr
tiestke*ttrkiestk*sttrrve*tk*pktk**qinfkh*swfgstksttkstksttt
tkstrksttkksttsstkpttkstsstsstsstsstkstsstkstsstkstsstkstsst
k*ktrse*ktrse*ktrse*ktrie*ktxse*ktxsexktxse*knk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG691 (SFG691Q) /CSM/SF/SFG6-D/SFG691Q.Seq.d/                        759   0.0
CFD244 (CFD244Q) /CSM/CF/CFD2-B/CFD244Q.Seq.d/                        759   0.0
AFF253 (AFF253Q) /CSM/AF/AFF2-C/AFF253Q.Seq.d/                        759   0.0
CHR862 (CHR862Q) /CSM/CH/CHR8-C/CHR862Q.Seq.d/                        753   0.0
CFE705 (CFE705Q) /CSM/CF/CFE7-A/CFE705Q.Seq.d/                        702   0.0
SLE154 (SLE154Q) /CSM/SL/SLE1-C/SLE154Q.Seq.d/                        660   0.0
CFF889 (CFF889Q) /CSM/CF/CFF8-D/CFF889Q.Seq.d/                        609   e-173
CHR135 (CHR135Q) /CSM/CH/CHR1-B/CHR135Q.Seq.d/                        559   e-158
CHD588 (CHD588Q) /CSM/CH/CHD5-D/CHD588Q.Seq.d/                        434   e-120
CFA606 (CFA606Q) /CSM/CF/CFA6-A/CFA606Q.Seq.d/                        303   4e-81
own update 2002.11.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   618   0.0    5
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38   0.006  11
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    44   0.006  14
AC120178|AC120178.3 Mus musculus clone RP24-496O9, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42   0.015  7
BE640695|BE640695.1 Cri2_1_C23_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_1_C23 5', mRNA sequence.    32   0.082  4
AC126955|AC126955.3 Rattus norvegicus clone CH230-9E1, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    50   0.086  1
AC098875|AC098875.3 Mus musculus clone RP23-1E10, complete sequence.    40   0.30   5
AL929259|AL929259.13 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-141E12.    36   0.32   6
AC124774|AC124774.4 Mus musculus chromosome 15 clone RP23-49E5, complete sequence.    40   0.48   6
BX890550|BX890550.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-110B6.    36   0.52   6
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...   218   5e-55
AE014185_311(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.6
CP000447_1605(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    35   4.7
DQ647662_1(DQ647662|pid:none) Sugarcane mosaic virus isolate Sc-...    35   4.7
protein update 2009. 5.12
PSORT 

 psg: 0.94  gvh: 0.69  alm: 0.62  top: 0.20  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for CFD244 is exc
5' end seq. ID CFD244F
5' end seq. 
>CFD244F.Seq
AAAAAAATAAATTAAATTATTAATAAAATGAGATTACTTAAAGCTTTATTAGTAGGTTGT
TTGGCTGTGAATGTAGCTTGTGCCACTACTGATGTTAAATTACAAAAATGGTTTGAAAAT
ATTGACCAAACTCAATTGAATCCATATCAACAATCAATCTATAATAGATTGGCATCAATG
GAAGAATACGTTGATGAATGGAAGAACATGTTCCATTTAATGGTCCTTGATGAAAATCAT
AATGAACAAAATCCAGAATGGTCAATCGTTAATAAAAAATGGAATGAAGGTTACAATTAT
GAAAATGAACAAGAAAATAACTTGGATAAAGAAATTAAACAAATTGAAGCCACTCATAAT
TTCCAAGATCTAGAAATGGAACTTAATCAAGAAAATCAAGAAAACAATCAAGAAAACAAT
CAAGAAAAAAACCAAGAAAACAATCAAGAAAAAAACCAAGAAAACAATCAAGAAAACAAT
CAAGAAAACAATCAAGAAAATAAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAA
AAACAAGAACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAA
GAAGTGAATGAAAAACAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTG
AACGAAAAACAAGAAGTGAATGAAAA----------
Length of 5' end seq. 686
3' end seq. ID CFD244Z
3' end seq. 
>CFD244Z.Seq
----------CANAATGAAAACCAAGAAGTGAATGAAAACCAAGAAGTGAATGAAAACCA
AGAAGTGAATGAAAANCAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGT
GAACGAAAAACAAGAAGTGAATGAAAANCAAGAACAAAATGAAAAACAAGAAATAAACCA
AGAACAATTGAGTCAACAAAAGAATGAACAACAAGAAAAATTGAATCAACAAAATAATCA
ACAACAAGAAGAGTTGAATAAACAAAATAACCAAAAACAAAATAGTAACAAATCAATTTT
AAACATTGAAGTTGGTTTGGGTCAACAAAATCAACAACAAAATCAACAAAATCAACAACA
ACAACAAAATCAACAAGAAAATCAACAACAAAAAAATCAACAACAAGCTCAACAAAACCA
ACAACAAAATCAACAAGCTCAACAAGCTCAACAAGCTCAACAAGCTCAACAAAATCAACA
AGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCA
ACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAA
TGAAAAACAAGAATTGAATGAAAAACAANAAGTGAATGAAAAACAANAAGTGAACNAAAA
ACAANAAGTGAATGAAAAAACAAG
Length of 3' end seq. 674
Connected seq. ID CFD244P
Connected seq. 
>CFD244P.Seq
AAAAAAATAAATTAAATTATTAATAAAATGAGATTACTTAAAGCTTTATTAGTAGGTTGT
TTGGCTGTGAATGTAGCTTGTGCCACTACTGATGTTAAATTACAAAAATGGTTTGAAAAT
ATTGACCAAACTCAATTGAATCCATATCAACAATCAATCTATAATAGATTGGCATCAATG
GAAGAATACGTTGATGAATGGAAGAACATGTTCCATTTAATGGTCCTTGATGAAAATCAT
AATGAACAAAATCCAGAATGGTCAATCGTTAATAAAAAATGGAATGAAGGTTACAATTAT
GAAAATGAACAAGAAAATAACTTGGATAAAGAAATTAAACAAATTGAAGCCACTCATAAT
TTCCAAGATCTAGAAATGGAACTTAATCAAGAAAATCAAGAAAACAATCAAGAAAACAAT
CAAGAAAAAAACCAAGAAAACAATCAAGAAAAAAACCAAGAAAACAATCAAGAAAACAAT
CAAGAAAACAATCAAGAAAATAAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAA
AAACAAGAACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAA
GAAGTGAATGAAAAACAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTG
AACGAAAAACAAGAAGTGAATGAAAA----------CANAATGAAAACCAAGAAGTGAAT
GAAAACCAAGAAGTGAATGAAAACCAAGAAGTGAATGAAAANCAAGAATTGAATGAAAAA
CAAGAAGTGAATGAAAAACAAGAAGTGAACGAAAAACAAGAAGTGAATGAAAANCAAGAA
CAAAATGAAAAACAAGAAATAAACCAAGAACAATTGAGTCAACAAAAGAATGAACAACAA
GAAAAATTGAATCAACAAAATAATCAACAACAAGAAGAGTTGAATAAACAAAATAACCAA
AAACAAAATAGTAACAAATCAATTTTAAACATTGAAGTTGGTTTGGGTCAACAAAATCAA
CAACAAAATCAACAAAATCAACAACAACAACAAAATCAACAAGAAAATCAACAACAAAAA
AATCAACAACAAGCTCAACAAAACCAACAACAAAATCAACAAGCTCAACAAGCTCAACAA
GCTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAA
CAAGCTCAACAAAATCAACAAGCTCAACAAAATGAAAAACAAGAAGTGAATGAAAAACAA
GAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAATTGAATGAAAAACAANAAGTG
AATGAAAAACAANAAGTGAACNAAAAACAANAAGTGAATGAAAAAACAAG
Length of connected seq. 1360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -