>CFD229 (CFD229Q) /CSM/CF/CFD2-B/CFD229Q.Seq.d/
GAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGAXXXXXXXXXXCTTGATA
TACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAA
TTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTG
GTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGG
ATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCT
CACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTG
GATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTA
AAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTT
GGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGA
GAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTC
AAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTNCTTAATTGAAGAT
TTCAATCGTAGTATTGAATATTTTGNATAAACATNCCAATGGTTNCAAAGTTTTNCAAAA
G

kk*KMSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNA
KQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSET
IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGPVQICWHKFALYFDIELR
EVPMEHDRYIMTP---

---LDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGK
NDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIF
ISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL
PDIVVQRVLIRHGFSHDMAMLLN*rfqs*y*ifxinxpmvxkfxk

Frame A:
eknkkchfimskqinikvfmilmhhhlqqkkfqnil*kksqinqkllei**lmnyy*mvm
qnktwphfvklilikrfmy*winvltri*ltrmnihkllklkvvvfif*ricgihqkvlk
llvvqlldlvklqcwvewl*ngdgekiernkvnhlinqtl*lvqfkfvgislhytliln*
ekyqwnmtvt**hq---

---LDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGK
NDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIF
ISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL
PDIVVQRVLIRHGFSHDMAMLLN*rfqs*y*ifxinxpmvxkfxk

Frame B:
kkiknvtsscqnk*i*rfl*flcittcnkrnfkiffkrrvk*trsy*rfnn**iiirw*c
ktklghilsn*s**rdscing*my*qeyd*qg*istnc*n*kslcsyfsgfveftrkf*n
ywlfnywi**scnvgwngfememerk*ketr*ti**tkhcnwsssnlla*vctil*y*ik
rstngt*plhndtr---

---liyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsygevk
mtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfs
fpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqty
qil*fkey*ldmvsvmiwqcxliedfnrsieyfx*txqwxqsfxk

Frame C:
kk*KMSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNA
KQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSET
IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGPVQICWHKFALYFDIELR
EVPMEHDRYIMTP---

---*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k
*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfh
fqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystklt
rycssksin*twfqs*ygnax*lkisivvlnilxkhxngxkvxqk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD229 (CFD229Q) /CSM/CF/CFD2-B/CFD229Q.Seq.d/                       2381   0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1247   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1239   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1239   0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/                       1239   0.0
CFE515 (CFE515Q) /CSM/CF/CFE5-A/CFE515Q.Seq.d/                       1239   0.0
CFC847 (CFC847Q) /CSM/CF/CFC8-B/CFC847Q.Seq.d/                       1239   0.0
SFG506 (SFG506Q) /CSM/SF/SFG5-A/SFG506Q.Seq.d/                       1231   0.0
CFJ529 (CFJ529Q) /CSM/CF/CFJ5-B/CFJ529Q.Seq.d/                       1231   0.0
CFH149 (CFH149Q) /CSM/CF/CFH1-C/CFH149Q.Seq.d/                       1231   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR375678|AR375678.1 Sequence 684 from patent US 6605709.           66   7e-29  6
BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   2e-09  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    70   3e-08  2
AE015656|AE015656.1 Shewanella oneidensis MR-1 section 205 of 457 of the complete genome.    46   3e-08  4
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   4e-07  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   4e-07  2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence.    66   1e-06  1
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   2e-06  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   2e-06  2
BH795514|BH795514.1 42F12LLI0005B Lawsonia library Lawsonia intracellularis genomic, DNA sequence.    42   2e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   520   e-146
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   518   e-145
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   505   e-141
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   504   e-141
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   486   e-136
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   484   e-135
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   472   e-131
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   471   e-131
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   469   e-131
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   466   e-130

 psg: 0.60  gvh: 0.39  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFD229 is nuc

>CFD229F.Seq
GAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGA----------

>CFD229Z.Seq
----------CTTGATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACC
CTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGG
CTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAA
AAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAAC
ATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTT
GCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTT
CATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGC
ACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGA
CCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTT
ACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAAT
GCTNCTTAATTGAAGATTTCAATCGTAGTATTGAATATTTTGNATAAACATNCCAATGGT
TNCAAAGTTTTNCAAAAG

>CFD229P.Seq
GAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGA----------CTTGATA
TACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAA
TTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTG
GTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGG
ATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCT
CACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTG
GATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTA
AAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTT
GGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGA
GAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTC
AAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTNCTTAATTGAAGAT
TTCAATCGTAGTATTGAATATTTTGNATAAACATNCCAATGGTTNCAAAGTTTTNCAAAA
G