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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD223
Library CF
(Link to library)
Clone ID CFD223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16452-1
Original site URL
Representative seq. ID CFD223P
(Link to Original site)
Representative DNA sequence 
>CFD223 (CFD223Q) /CSM/CF/CFD2-A/CFD223Q.Seq.d/
ATTTATTTTNACAGATACAATTTGTTTTTTTGTATATAATTTTATATTTAAAAATGAAAG
TTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTTG
ATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTCT
TAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCAA
ACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTCC
CAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTTT
CAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAAA
AAACTTTTACTCCACAAGATTTAATTTCTGAANTTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTTAGCCAXXXXX
XXXXXCGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTACGTTTTA
CCAGAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTATCCCATCT
GAACTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGATGCTTCA
GGTTCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATCTGCTTCA
GGTGAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCAAATTTTC
CTCTTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACATTATGAAA
ATCAGTTTCACTGCTCAATCTGATACTTTATTATATCGTTCATNCNCAACGTCAATATTA
A
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iyfxrynlffci*fyi*k*klfylf*wqslpfhllplilliievvtllsnqlnhkiqnys
*kvqllikfhlkilmmfkfqtssltlwvsyh*tmkkfqvsqllqsltnqn*iysfqlnqf
qvmi**tlkfsiqnq*fqlkklllhki*FLXLTTIVTGVTPNVHGIVSSNWINPTTGHKV
HAYEKSTQSSAANIAYLA---

---VGEHTHDITETLPHIYVLPESSEKVDDICQQIQSSIPSELSAQCFIHTLPVSFLQDA
SGSAPAPTQTPVPSDSDSSASGENPIIATQNTNRIAAFQIFLFFPIVFALFIGGGILYIM
KISFTAQSDTLLYRSXXTSIL
Translated Amino Acid sequence (All Frames) 
Frame A:
iyfxrynlffci*fyi*k*klfylf*wqslpfhllplilliievvtllsnqlnhkiqnys
*kvqllikfhlkilmmfkfqtssltlwvsyh*tmkkfqvsqllqsltnqn*iysfqlnqf
qvmi**tlkfsiqnq*fqlkklllhki*FLXLTTIVTGVTPNVHGIVSSNWINPTTGHKV
HAYEKSTQSSAANIAYLA---

---rw*tys*yh*nppthlrftrkq*ks**hlptnsiiypi*tlcpmfhsysssfipsrc
frfstssntntspirq*ficfr*ksnhcnskyqqnccfpnfpllpnrfciihwwwyfihy
enqfhcsi*yfiisfxxnvni

Frame B:
fixtdticffvynfifknescficfngnhcrficch*fc*s*kwshcyqtn*itkfkiil
krfsf**sft*ky**cssfkhhhsrygsltikq*rsfrspscfnl*qtkikfilfs*isf
k**fskl*nfqfrindfn*knfystrfnf*x*pllllvlhqmfmvlfhpigsiqqlvirf
mptknqlnhqlptllt*p---

---VGEHTHDITETLPHIYVLPESSEKVDDICQQIQSSIPSELSAQCFIHTLPVSFLQDA
SGSAPAPTQTPVPSDSDSSASGENPIIATQNTNRIAAFQIFLFFPIVFALFIGGGILYIM
KISFTAQSDTLLYRSXXTSIL

Frame C:
lfxqiqfvflyiilylkmkvvlfvlmaiiavsfaatnfvdhrsghivikptesqnsklfl
kgsafdkvslknindvqvsniithvmgllplnneevsglpaasifnkpklnlffsvesvs
sddlvnskifnsesmisiektftpqdlisexnhycywcytkcswycfiqldqsnnws*gs
clrkinsiiscqhclls---

---lvnilmislkpshtftfyqkavkklmtfankfnhlshlnslpnvsfilfqfhsfkml
qvqhqlqhkhqshqtvihllqvkiqslqlkiptelllskfssssqsflhyslvvvfytl*
ksvsllnlilyyivhxqrqy*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD223 (CFD223Q) /CSM/CF/CFD2-A/CFD223Q.Seq.d/                       1899   0.0
SFF491 (SFF491Q) /CSM/SF/SFF4-D/SFF491Q.Seq.d/                       1116   0.0
CFJ250 (CFJ250Q) /CSM/CF/CFJ2-C/CFJ250Q.Seq.d/                       1116   0.0
CFF334 (CFF334Q) /CSM/CF/CFF3-B/CFF334Q.Seq.d/                       1116   0.0
AFK285 (AFK285Q) /CSM/AF/AFK2-D/AFK285Q.Seq.d/                       1116   0.0
AFI804 (AFI804Q) /CSM/AF/AFI8-A/AFI804Q.Seq.d/                       1116   0.0
AFE793 (AFE793Q) /CSM/AF/AFE7-D/AFE793Q.Seq.d/                       1116   0.0
AFL871 (AFL871Q) /CSM/AF/AFL8-C/AFL871Q.Seq.d/                       1112   0.0
VFN730 (VFN730Q) /CSM/VF/VFN7-B/VFN730Q.Seq.d/                       1110   0.0
SFD614 (SFD614Q) /CSM/SF/SFD6-A/SFD614Q.Seq.d/                       1110   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-05  19
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   7e-05  19
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    32   1e-04  14
AX458482|AX458482.1 Sequence 28 from Patent WO0246454.             46   1e-04  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-04  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   5e-04  16
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    46   5e-04  16
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   7e-04  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.001  18
BZ361655|BZ361655.1 ie23f07.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ie23f07 5', DNA sequence.    40   0.003  2
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000480_2681(CP000480|pid:none) Mycobacterium smegmatis str. MC...    36   1.8
(O94323) RecName: Full=Uncharacterized pyrophosphatase/phosphodi...    36   2.4
CP000885_1453(CP000885|pid:none) Clostridium phytofermentans ISD...    35   5.2
EU559167_129(EU559167|pid:none) Candidatus Nitrospira defluvii C...    34   8.9
CP000454_2733(CP000454|pid:none) Arthrobacter sp. FB24, complete...    34   9.0
protein update 2008.12.25
PSORT 

 psg: 0.93  gvh: 0.64  alm: 0.21  top: 0.53  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.40  leu: 0.20  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CFD223 is pla
5' end seq. ID CFD223F
5' end seq. 
>CFD223F.Seq
ATTTATTTTNACAGATACAATTTGTTTTTTTGTATATAATTTTATATTTAAAAATGAAAG
TTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTTG
ATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTCT
TAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCAA
ACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTCC
CAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTTT
CAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAAA
AAACTTTTACTCCACAAGATTTAATTTCTGAANTTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTTAGCCA-----
-----
Length of 5' end seq. 595
3' end seq. ID CFD223Z
3' end seq. 
>CFD223Z.Seq
----------CGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTACG
TTTTACCAGAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTATCC
CATCTGAACTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGATG
CTTCAGGTTCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATCTG
CTTCAGGTGAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCAAA
TTTTCCTCTTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACATTA
TGAAAATCAGTTTCACTGCTCAATCTGATACTTTATTATATCGTTCATNCNCAACGTCAA
TATTAA
Length of 3' end seq. 416
Connected seq. ID CFD223P
Connected seq. 
>CFD223P.Seq
ATTTATTTTNACAGATACAATTTGTTTTTTTGTATATAATTTTATATTTAAAAATGAAAG
TTGTTTTATTTGTTTTAATGGCAATCATTGCCGTTTCATTTGCTGCCACTAATTTTGTTG
ATCATAGAAGTGGTCACATTGTTATCAAACCAACTGAATCACAAAATTCAAAATTATTCT
TAAAAGGTTCAGCTTTTGATAAAGTTTCACTTAAAAATATTAATGATGTTCAAGTTTCAA
ACATCATCACTCACGTTATGGGTCTCTTACCATTAAACAATGAAGAAGTTTCAGGTCTCC
CAGCTGCTTCAATCTTTAACAAACCAAAATTAAATTTATTCTTTTCAGTTGAATCAGTTT
CAAGTGATGATTTAGTAAACTCTAAAATTTTCAATTCAGAATCAATGATTTCAATTGAAA
AAACTTTTACTCCACAAGATTTAATTTCTGAANTTAACCACTATTGTTACTGGTGTTACA
CCAAATGTTCATGGTATTGTTTCATCCAATTGGATCAATCCAACAACTGGTCATAAGGTT
CATGCCTACGAAAAATCAACTCAATCATCAGCTGCCAACATTGCTTACTTAGCCA-----
-----CGTTGGTGAACATACTCATGATATCACTGAAACCCTCCCACACATTTACGTTTTA
CCAGAAAGCAGTGAAAAAGTTGATGACATTTGCCAACAAATTCAATCATCTATCCCATCT
GAACTCTCTGCCCAATGTTTCATTCATACTCTTCCAGTTTCATTCCTTCAAGATGCTTCA
GGTTCAGCACCAGCTCCAACACAAACACCAGTCCCATCAGACAGTGATTCATCTGCTTCA
GGTGAAAATCCAATCATTGCAACTCAAAATACCAACAGAATTGCTGCTTTCCAAATTTTC
CTCTTCTTCCCAATCGTTTTTGCATTATTCATTGGTGGTGGTATTTTATACATTATGAAA
ATCAGTTTCACTGCTCAATCTGATACTTTATTATATCGTTCATNCNCAACGTCAATATTA
A
Length of connected seq. 1011
Full length Seq ID -
Full length Seq. -
Length of full length seq. -