NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD217
Library CF
(Link to library)
Clone ID CFD217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFD217P
(Link to Original site)
Representative DNA sequence 
>CFD217 (CFD217Q) /CSM/CF/CFD2-A/CFD217Q.Seq.d/
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTTTTAAGATTACGAGGTGGTATGCAAATTTTTGTTAA
AACTCTCACTGGTAAGACCATCACCTTAGAGGGTTGAAGGTAGTGATACATTGAAATGTC
NAAGCCAAATNCCAGACAANAAAGGNTTCCNCCAGATCACCAAGATAATTTTCGCTGGNA
ACAATTAGAAGANGGGCGNACTNTTTTTGCTACACATCCAAAXXXXXXXXXXAAAATGTA
AAAGCCCAAATTCCAAAGACAAANGAAGGTTTTCCCCCCAATACAAAAAAGATTTATTTT
TCGGGGGTAAAACAATTAGAANATGGGGGTTCTCTCTCTGANTACAACATCCAAAAAGAA
NCCCNCTCCCCATTTAGTTTTAAGATTAAGAGGGTGGTATGCAATTNTTTGTTAAANCTC
TCACTGGTAAAACCATCACCTTGAAAGTCGAAGGTAGTGATAACATTGAAAATGTCAAAG
CCAAAATCCAAGACAAAGAAGGTATTCCACCAAGATCAACAACGTNTCATTTTCGCTGGT
AAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACCTTGACTGGTAAG
ACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAA
GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTG
GAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACN
CNCNCTGATTACAACATTCAAAAGGAATCCACNCTNCCATTTAGTNCNCAGNNTAAGNAG
GTGGTAACTAAGTTTGGTGCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lhin*lckfllklslvkpshwklkvvttlkmsrlkfktkkvfhqinkd*sllvnn*kmvv
lflittfkrnplsi*fld*evvcksl*klslvkpsp*rlkvvitlkmlklkfktkkvshq
inkd*fslvnn*kmvvlsltttfkrnplstwfsd*evvcksl*kp*lvklspwkskvltt
lkmlkpksqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvk
tltgktitleg*r**YIEMSKPNXRQXRXPPDHQDNFRWXQLEXGRTXFATHP---

---NVKAQIPKTXEGFPPNTKKIYFSGVKQLEXGGSLSXYNIQKEXXSPFSFKIKRVVCN
XLLXLSLVKPSP*kskvvitlkmskpksktkkvfhqdqqrxifagkqledgrtlsdyniq
kestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifa
gkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkaki
qdkegippdqqrlifagkqledgrtxxdyniqkestlpfsxqxkxvvtkfga
Translated Amino Acid sequence (All Frames) 
Frame A:
fty*limqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledgr
tlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegipp
dqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdn
ienvkakiprqrryptrstkinfrw*tirrwsysl*lqhskgihspfsfkitrwyanfc*
nshw*dhhlrglkvvih*nvxakxqtxkxsxrspr*fslxtirrxaxxfcytsk---

---km*kpkfqrqxkvfppiqkrfifrg*nn*xmgvlslxttskkxpxphlvlrlrgwya
ixc*xshw*nhhlesrr***h*kcqsqnprqrrystkinnvsfslvnn*kmavlslitts
kknplsi*fsd*evvcksl*kp*lvrpshwkskvlitlkmskpkfktkkvfhqinkd*fs
lvnn*kmvvlslttifkrnplsi*fsd*evvcksllkl*qvklspwkskvvitlkmlkpk
sktkkvfhqinnvsfslvnn*kmvvxxlittfkrnpxxhlvxxxxrw*lslv

Frame B:
lhin*lckfllklslvkpshwklkvvttlkmsrlkfktkkvfhqinkd*sllvnn*kmvv
lflittfkrnplsi*fld*evvcksl*klslvkpsp*rlkvvitlkmlklkfktkkvshq
inkd*fslvnn*kmvvlsltttfkrnplstwfsd*evvcksl*kp*lvklspwkskvltt
lkmlkpksqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvk
tltgktitleg*r**YIEMSKPNXRQXRXPPDHQDNFRWXQLEXGRTXFATHP---

---kckspnskdkxrfspqykkdlffggktirxwgfsl*xqhpkrxplpi*f*d*eggmq
xfvkxltgktitlkvegsdnienvkakiqdkegipprsttxhfrw*tirrwpysl*lqhp
krihspfssqikrwyanlcknldw*dhhigsrrf**h*kcqsqnsrqrrystrstkinfr
w*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr*nyhlgsrr***h*kc*sqn
prqrrystrsttshfrw*tirrwsyxx*lqhskgihxxi*xxx*xggn*vwc

Frame C:
yilinyanfc*nshw*nhhigs*r**qh*kcqg*nsrqrrystrstkinlcw*tirrwsy
sf*lqhskgihspfss*ikrwyanlcknshw*nhhlrg*r***h*kc*s*nsrqrryptr
stkinfrw*tirrwsysl*lqhskgihsplgsqikrwyanlcknldw*nyhlgsrrf*qh
*kc*sqnpktkkvshqinkd*fslvnn*kmvvlsltttfkrnplsi*f*dyevvckfllk
lslvrpsp*rvegsdtlkcxsqxpdxkgfxqitkiifagnn*kxgxlfllhiq---

---NVKAQIPKTXEGFPPNTKKIYFSGVKQLEXGGSLSXYNIQKEXXSPFSFKIKRVVCN
XLLXLSLVKPSP*kskvvitlkmskpksktkkvfhqdqqrxifagkqledgrtlsdyniq
kestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifa
gkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkaki
qdkegippdqqrlifagkqledgrtxxdyniqkestlpfsxqxkxvvtkfga
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD217 (CFD217Q) /CSM/CF/CFD2-A/CFD217Q.Seq.d/                       3271   0.0
CFD132 (CFD132Q) /CSM/CF/CFD1-B/CFD132Q.Seq.d/                       1437   0.0
SFI844 (SFI844Q) /CSM/SF/SFI8-B/SFI844Q.Seq.d/                       1429   0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/                       1380   0.0
CFA808 (CFA808Q) /CSM/CF/CFA8-A/CFA808Q.Seq.d/                       1372   0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/                       1336   0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/                       1306   0.0
AFL428 (AFL428Q) /CSM/AF/AFL4-B/AFL428Q.Seq.d/                       1304   0.0
VFI435 (VFI435Q) /CSM/VF/VFI4-B/VFI435Q.Seq.d/                       1302   0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/                       1302   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.  1120   0.0    8
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   690   0.0    6
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   684   0.0    6
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   684   0.0    6
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   642   0.0    7
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   668   0.0    5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   668   0.0    5
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   632   0.0    6
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      337   0.0    6
X61053|X61053.1 T.pyriformis TU20 gene for ubiquitin.             214   e-168  9
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S34285(S34285) polyubiquitin - tomato  &X73156_1(X73156|pid:none)     354   e-129
DQ216234_1(DQ216234|pid:none) Taeniopygia guttata clone 0058P001...   352   e-112
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   355   e-109
S55245(S55245)polyubiquitin 5 - Arabidopsis thaliana                  339   e-106
A29584(A29584) ubiquitin precursor - pig (fragment)  &M18159_1(M...   339   e-105
I45964(I45964) polyubiquitin - bovine (fragment)  &M62428_1(M624...   339   e-105
AL117514_1(AL117514|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...   339   e-105
FN316697_1(FN316697|pid:none) Schistosoma japonicum isolate Anhu...   340   e-105
EU348739_1(EU348739|pid:none) Adonis aestivalis var. palaestina ...   336   e-104
AF528710_1(AF528710|pid:none) Arabidopsis thaliana ecotype Ita-0...   336   e-104
protein update 2009. 5.12
PSORT 

 psg: 0.45  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFD217 is cyt
5' end seq. ID CFD217F
5' end seq. 
>CFD217F.Seq
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTTTTAAGATTACGAGGTGGTATGCAAATTTTTGTTAA
AACTCTCACTGGTAAGACCATCACCTTAGAGGGTTGAAGGTAGTGATACATTGAAATGTC
NAAGCCAAATNCCAGACAANAAAGGNTTCCNCCAGATCACCAAGATAATTTTCGCTGGNA
ACAATTAGAAGANGGGCGNACTNTTTTTGCTACACATCCAAA----------
Length of 5' end seq. 882
3' end seq. ID CFD217Z
3' end seq. 
>CFD217Z.Seq
----------AAAATGTAAAAGCCCAAATTCCAAAGACAAANGAAGGTTTTCCCCCCAAT
ACAAAAAAGATTTATTTTTCGGGGGTAAAACAATTAGAANATGGGGGTTCTCTCTCTGAN
TACAACATCCAAAAAGAANCCCNCTCCCCATTTAGTTTTAAGATTAAGAGGGTGGTATGC
AATTNTTTGTTAAANCTCTCACTGGTAAAACCATCACCTTGAAAGTCGAAGGTAGTGATA
ACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAAGATCAACAA
CGTNTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATC
CAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTA
AAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAAT
GTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTC
GCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCC
ACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACA
GGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAA
TTAGAAGATGGTCGTACNCNCNCTGATTACAACATTCAAAAGGAATCCACNCTNCCATTT
AGTNCNCAGNNTAAGNAGGTGGTAACTAAGTTTGGTGCC
Length of 3' end seq. 869
Connected seq. ID CFD217P
Connected seq. 
>CFD217P.Seq
TTTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACA
TTGGAAGTTGAAGGTAGTGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTAGATTAAGA
GGTGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAA
GGTAGTGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCA
GATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAC
TACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAAC
ATTGAAAATGTTAAAGCCAAAATCCCAAGACAAAGAAGGTATCCCACCAGATCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTTTTAAGATTACGAGGTGGTATGCAAATTTTTGTTAA
AACTCTCACTGGTAAGACCATCACCTTAGAGGGTTGAAGGTAGTGATACATTGAAATGTC
NAAGCCAAATNCCAGACAANAAAGGNTTCCNCCAGATCACCAAGATAATTTTCGCTGGNA
ACAATTAGAAGANGGGCGNACTNTTTTTGCTACACATCCAAA----------AAAATGTA
AAAGCCCAAATTCCAAAGACAAANGAAGGTTTTCCCCCCAATACAAAAAAGATTTATTTT
TCGGGGGTAAAACAATTAGAANATGGGGGTTCTCTCTCTGANTACAACATCCAAAAAGAA
NCCCNCTCCCCATTTAGTTTTAAGATTAAGAGGGTGGTATGCAATTNTTTGTTAAANCTC
TCACTGGTAAAACCATCACCTTGAAAGTCGAAGGTAGTGATAACATTGAAAATGTCAAAG
CCAAAATCCAAGACAAAGAAGGTATTCCACCAAGATCAACAACGTNTCATTTTCGCTGGT
AAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACCTTGACTGGTAAG
ACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAA
GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTG
GAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACN
CNCNCTGATTACAACATTCAAAAGGAATCCACNCTNCCATTTAGTNCNCAGNNTAAGNAG
GTGGTAACTAAGTTTGGTGCC
Length of connected seq. 1751
Full length Seq ID -
Full length Seq. -
Length of full length seq. -