>CFD204 (CFD204Q) /CSM/CF/CFD2-A/CFD204Q.Seq.d/
AGGTAATATCTTTACACTTTCAGTGAATCACGTTTCAATCTCATCAAATGGTTACTATGA
TTTCATGCCACTCTTTGGTGCTAGAGGTTCTTATCTCTACAATAAAGTTAGCAATTTCAG
AGATACCACTACAGCACCAGTAACTATGCTTTCATTCATTTCCTATGATAATGGTGGTAG
ATGGAACAGACTCACTCCACCAACTAATATGCCATGTACAGTAAGTGGTCCTTGTAAATT
AAATGTTCATGGTCTCTCTGCTTTTGTCGATAAAACCAGAGGTTATGGTCCAATCTATTC
CATTGCTAGTGCACCAGGTTTAATTCTTGCCACTGGTAATGCCAATCCAGCTTTATCATC
CGATCCAATCAAAAGTAGAGTTAAAACAGTTTTATCAACCGATAATGGTCAAACATGGTC
TAAATTCTTTGATGAAGGTACCATCTATGAATTTGGTAACTATGGTTCTTCAATTATTTT
CGCAACTGCTATGAACGATACAAAGACCTTTTACTATACCTTTGGTCTTGATCAAAAACC
AATTGCAATCAATATGACATTAAAATCAAATGTTGATGTCATCAATATCATTACAAGTCC
AAGAAATGATGGAAATAAATTCATCTTTTTAGTAGAGGATGAATATGATATCGGTCAAAT
GATTGXXXXXXXXXXTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAAT
ACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTC
GAAAGATTTTGAATGTGATATTGGTTACGAAAGTGCANACGATAGCAGTTCCGATAATGA
TGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAAT
TGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAA
ATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTA
TTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGAT
CGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTNCTTGGTGGTTTTGGTTTCTACG
TTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCG
GTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTA
TTGAAGATGATGATGCTCAAATTTTAAATGATAAGNATTTACAAGNTAACGAAGATTTTA
AAAAAAAA

GNIFTLSVNHVSISSNGYYDFMPLFGARGSYLYNKVSNFRDTTTAPVTMLSFISYDNGGR
WNRLTPPTNMPCTVSGPCKLNVHGLSAFVDKTRGYGPIYSIASAPGLILATGNANPALSS
DPIKSRVKTVLSTDNGQTWSKFFDEGTIYEFGNYGSSIIFATAMNDTKTFYYTFGLDQKP
IAINMTLKSNVDVINIITSPRNDGNKFIFLVEDEYDIGQMI---

---CILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVERF*m*ywlrkcxr*qfr**wf
ylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrchtmcrwc*cnlft
rdchvsikkffkwwqrldrwccycyscfswxlvvlvstflriqisnkny*kwlvfqrsvq
nivlsvlnqth*lmmnlvlkmmmlkf*mixiykxtkilkk

Frame A:
r*ylytfsesrfnlikwll*fhatlwc*rflslq*s*qfqryhystsnyafihfl**ww*
meqthstn*yamyskwsl*ikcswslcfcr*nqrlwsnlfhc*ctrfnschw*cqssfii
rsnqk*s*nsfinr*wsnmv*il**ryhl*iw*lwffnyfrncyerykdlllylws*skt
ncnqydikikc*chqyhykskk*wk*ihlfsrg*i*yrsnd---

---CILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVERF*m*ywlrkcxr*qfr**wf
ylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrchtmcrwc*cnlft
rdchvsikkffkwwqrldrwccycyscfswxlvvlvstflriqisnkny*kwlvfqrsvq
nivlsvlnqth*lmmnlvlkmmmlkf*mixiykxtkilkk

Frame B:
GNIFTLSVNHVSISSNGYYDFMPLFGARGSYLYNKVSNFRDTTTAPVTMLSFISYDNGGR
WNRLTPPTNMPCTVSGPCKLNVHGLSAFVDKTRGYGPIYSIASAPGLILATGNANPALSS
DPIKSRVKTVLSTDNGQTWSKFFDEGTIYEFGNYGSSIIFATAMNDTKTFYYTFGLDQKP
IAINMTLKSNVDVINIITSPRNDGNKFIFLVEDEYDIGQMI---

---vf*vkkqliellnqipivi*pnkhkfqinivnvqskdfecdigyesaxdsssdndgs
tsgipsgsseqlncrksiasqyvpiteenctpgqtyikskgfrrvaatqcvggvnatysp
eivmcpsknsssggkgwiagvviailalagxwwfwflrf*esrfqtkiikngwffkgrsk
i*cyry*tklis***iwy*r**csnfk**xftx*rrf*kk

Frame C:
vislhfq*itfqshqmvtmischslvlevlistiklaiseiplqhq*lcfhsfpmimvvd
gtdslhqlichvq*vvlvn*mfmvslllsikpevmvqsipllvhqv*flplvmpiqlyhp
iqskvelkqfyqpimvkhglnslmkvpsmnlvtmvlqlfsqll*tiqrpftiplvliknq
lqsi*h*nqmlmssislqvqemmeinssf**rmnmisvk*l---

---yfr*knnl*nc*tkyqllydptstnfk*il*mysrkilnvilvtkvxtiavpimmvl
plvfhldlqnn*ivvnqllhnmfqslkkivhqvkpisnqkvseeslphnv*vvlmqlihq
rlscvhqkilqvvakvgslvllllfll*lvlggfgfyvfknpdfkqkllkmvgfskvgpk
ysvigikpnsladdefgiedddaqilndkxlqxnedfkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD204 (CFD204Q) /CSM/CF/CFD2-A/CFD204Q.Seq.d/                       2531   0.0
SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/                       1219   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1205   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                       1205   0.0
VHH854 (VHH854Q) /CSM/VH/VHH8-C/VHH854Q.Seq.d/                       1205   0.0
CHR654 (CHR654Q) /CSM/CH/CHR6-C/CHR654Q.Seq.d/                       1205   0.0
AHL386 (AHL386Q) /CSM/AH/AHL3-D/AHL386Q.Seq.d/                       1205   0.0
VHQ405 (VHQ405Q) /CSM/VH/VHQ4-A/VHQ405Q.Seq.d/                       1203   0.0
VHI424 (VHI424Q) /CSM/VH/VHI4-A/VHI424Q.Seq.d/                       1199   0.0
VHB650 (VHB650Q) /CSM/VH/VHB6-C/VHB650Q.Seq.d/                       1199   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.004  19
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    36   0.008  13
CF198537|CF198537.1 EST0132 Tamarix androssowii leaf Tamarix androssowii cDNA, mRNA sequence.    38   0.019  2
AC094635|AC094635.10 Rattus norvegicus clone CH230-5D20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.041  8
AC114258|AC114258.3 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    36   0.089  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.12   20
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    32   0.25   12
AC109887|AC109887.5 Rattus norvegicus clone CH230-312G3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    36   0.27   7
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   0.30   12
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             34   0.33   19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    92   3e-17
CP001323_564(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    90   2e-16
FM992688_1151(FM992688|pid:none) Candida dubliniensis CD36 chrom...    89   3e-16
AM270061_66(AM270061|pid:none) Aspergillus niger contig An03c020...    85   6e-15
BX842634_18(BX842634|pid:none) Neurospora crassa DNA linkage gro...    72   3e-13
AM920431_103(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    79   4e-13
AP007175_664(AP007175|pid:none) Aspergillus oryzae RIB40 genomic...    77   2e-12
CR382137_716(CR382137|pid:none) Debaryomyces hansenii strain CBS...    75   4e-12
AE014187_491(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    75   7e-12
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    70   1e-10

 psg: 0.86  gvh: 0.44  alm: 0.43  top: 0.43  tms: 0.00  mit: 0.28  mip: 0.21
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFD204 is cyt

>CFD204F.Seq
AGGTAATATCTTTACACTTTCAGTGAATCACGTTTCAATCTCATCAAATGGTTACTATGA
TTTCATGCCACTCTTTGGTGCTAGAGGTTCTTATCTCTACAATAAAGTTAGCAATTTCAG
AGATACCACTACAGCACCAGTAACTATGCTTTCATTCATTTCCTATGATAATGGTGGTAG
ATGGAACAGACTCACTCCACCAACTAATATGCCATGTACAGTAAGTGGTCCTTGTAAATT
AAATGTTCATGGTCTCTCTGCTTTTGTCGATAAAACCAGAGGTTATGGTCCAATCTATTC
CATTGCTAGTGCACCAGGTTTAATTCTTGCCACTGGTAATGCCAATCCAGCTTTATCATC
CGATCCAATCAAAAGTAGAGTTAAAACAGTTTTATCAACCGATAATGGTCAAACATGGTC
TAAATTCTTTGATGAAGGTACCATCTATGAATTTGGTAACTATGGTTCTTCAATTATTTT
CGCAACTGCTATGAACGATACAAAGACCTTTTACTATACCTTTGGTCTTGATCAAAAACC
AATTGCAATCAATATGACATTAAAATCAAATGTTGATGTCATCAATATCATTACAAGTCC
AAGAAATGATGGAAATAAATTCATCTTTTTAGTAGAGGATGAATATGATATCGGTCAAAT
GATTG----------

>CFD204Z.Seq
----------TGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAA
TTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAAG
ATTTTGAATGTGATATTGGTTACGAAAGTGCANACGATAGCAGTTCCGATAATGATGGTT
CTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTT
CACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAA
AAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCAC
CAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTG
GTGTTGTTATTGCTATTCTTGCTTTAGCTGGTNCTTGGTGGTTTTGGTTTCTACGTTTTT
AAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCA
AAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAA
GATGATGATGCTCAAATTTTAAATGATAAGNATTTACAAGNTAACGAAGATTTTAAAAAA
AAA

>CFD204P.Seq
AGGTAATATCTTTACACTTTCAGTGAATCACGTTTCAATCTCATCAAATGGTTACTATGA
TTTCATGCCACTCTTTGGTGCTAGAGGTTCTTATCTCTACAATAAAGTTAGCAATTTCAG
AGATACCACTACAGCACCAGTAACTATGCTTTCATTCATTTCCTATGATAATGGTGGTAG
ATGGAACAGACTCACTCCACCAACTAATATGCCATGTACAGTAAGTGGTCCTTGTAAATT
AAATGTTCATGGTCTCTCTGCTTTTGTCGATAAAACCAGAGGTTATGGTCCAATCTATTC
CATTGCTAGTGCACCAGGTTTAATTCTTGCCACTGGTAATGCCAATCCAGCTTTATCATC
CGATCCAATCAAAAGTAGAGTTAAAACAGTTTTATCAACCGATAATGGTCAAACATGGTC
TAAATTCTTTGATGAAGGTACCATCTATGAATTTGGTAACTATGGTTCTTCAATTATTTT
CGCAACTGCTATGAACGATACAAAGACCTTTTACTATACCTTTGGTCTTGATCAAAAACC
AATTGCAATCAATATGACATTAAAATCAAATGTTGATGTCATCAATATCATTACAAGTCC
AAGAAATGATGGAAATAAATTCATCTTTTTAGTAGAGGATGAATATGATATCGGTCAAAT
GATTG----------TGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAAT
ACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTC
GAAAGATTTTGAATGTGATATTGGTTACGAAAGTGCANACGATAGCAGTTCCGATAATGA
TGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAAT
TGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAA
ATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTA
TTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGAT
CGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTNCTTGGTGGTTTTGGTTTCTACG
TTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCG
GTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTA
TTGAAGATGATGATGCTCAAATTTTAAATGATAAGNATTTACAAGNTAACGAAGATTTTA
AAAAAAAA