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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD201
Library CF
(Link to library)
Clone ID CFD201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12865-1|Contig-U16524-1
Original site URL
Representative seq. ID CFD201P
(Link to Original site)
Representative DNA sequence 
>CFD201 (CFD201Q) /CSM/CF/CFD2-A/CFD201Q.Seq.d/
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATTTATCTAAAAATTAAATTTGA
AAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTNTTAAAAAAAAATTNNTT
TTTTNCCNNNAAAAAAAXXXXXXXXXXAACAATTTAATGAAGCTGGTGAATTCATTGTTN
CCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAANANCAACAACAAGATC
ANCAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAAAG
ATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGAAA
ATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAAAC
CATCATCTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesghlskn*i*
KFLTKKKKKKKKNFXKKKXXFXXXK---

---QFNEAGEFIVXDSANIYVNKVIVSQXQQQDXQKWFEKDAKDHANKMAATKDMEQHEH
EDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSS
Translated Amino Acid sequence (All Frames) 
Frame A:
hkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*vlylgesghlskn*i*
KFLTKKKKKKKKNFXKKKXXFXXXK---

---nnlmklvnslxpiqlismsirl**vxxnnkixknglkrmlkimptkwqqlkiwnnmn
mriskiqmmlktmkmlnqiqqppkiqipltiklnhhl

Frame B:
ingeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvviylkikfe
sf*qkkkkkkkkixlkknxffxxkk---

---ti**sw*ihcxrfs*ylcq*gysksxxttrsxkmv*kgc*rscqqngsn*rygtt*t
*gspkyk*cskq*kc*tkfsshqrfkyr*q*s*tii*

Frame C:
*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*ewsfi*klnlk
vfnkkkkkkkkkfx*kkixfxpxkk---

---QFNEAGEFIVXDSANIYVNKVIVSQXQQQDXQKWFEKDAKDHANKMAATKDMEQHEH
EDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD201 (CFD201Q) /CSM/CF/CFD2-A/CFD201Q.Seq.d/                        537   e-152
SSL677 (SSL677Q) /CSM/SS/SSL6-D/SSL677Q.Seq.d/                        531   e-150
SSK563 (SSK563Q) /CSM/SS/SSK5-C/SSK563Q.Seq.d/                        531   e-150
SSK138 (SSK138Q) /CSM/SS/SSK1-B/SSK138Q.Seq.d/                        531   e-150
SSJ469 (SSJ469Q) /CSM/SS/SSJ4-C/SSJ469Q.Seq.d/                        531   e-150
SSI241 (SSI241Q) /CSM/SS/SSI2-B/SSI241Q.Seq.d/                        531   e-150
SSG743 (SSG743Q) /CSM/SS/SSG7-B/SSG743Q.Seq.d/                        531   e-150
SSF377 (SSF377Q) /CSM/SS/SSF3-D/SSF377Q.Seq.d/                        531   e-150
SSD186 (SSD186Q) /CSM/SS/SSD1-D/SSD186Q.Seq.d/                        531   e-150
SSA113 (SSA113Q) /CSM/SS/SSA1-A/SSA113Q.Seq.d/                        531   e-150
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      311   6e-81  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   311   6e-81  1
V00192|V00192.1 Dictyostelium discoideum 5.8S ribosomal RNA.      295   3e-76  1
AF219103|AF219103.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   268   8e-68  1
AF219102|AF219102.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   268   8e-68  1
AF219101|AF219101.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   266   3e-67  1
AF219107|AF219107.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   262   5e-66  1
AF351197|AF351197.1 Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   260   2e-65  1
AF351199|AF351199.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   260   2e-65  1
AY330646|AY330646.1 Dictyostelium clavatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.   260   2e-65  1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_26(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.15
AE001362_162(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.43
AL034558_26(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    36   0.73
CR382121_19(CR382121|pid:none) Kluyveromyces lactis strain NRRL ...    36   0.73
AE014188_214(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.73
(P47988) RecName: Full=TY1 enhancer activator;  &S62067(S62067;S...    35   0.95
AL844509_281(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.2
AE014187_81(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    33   3.6
CR931997_1301(CR931997|pid:none) Corynebacterium jeikeium K411 c...    33   3.6
BC169997_1(BC169997|pid:none) Xenopus laevis RPGR, mRNA (cDNA cl...    33   4.7
protein update 2009. 5.12
PSORT 

 psg: 0.38  gvh: 0.38  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFD201 is cyt
5' end seq. ID CFD201F
5' end seq. 
>CFD201F.Seq
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATTTATCTAAAAATTAAATTTGA
AAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTNTTAAAAAAAAATTNNTT
TTTTNCCNNNAAAAAAA----------
Length of 5' end seq. 257
3' end seq. ID CFD201Z
3' end seq. 
>CFD201Z.Seq
----------AACAATTTAATGAAGCTGGTGAATTCATTGTTNCCGATTCAGCTAATATC
TATGTCAATAAGGTTATAGTAAGTCAANANCAACAACAAGATCANCAAAAATGGTTTGAA
AAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAA
CATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCA
GCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAAACCATCATCTAA
Length of 3' end seq. 283
Connected seq. ID CFD201P
Connected seq. 
>CFD201P.Seq
CATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATT
CACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTC
CTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATTTATCTAAAAATTAAATTTGA
AAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTNTTAAAAAAAAATTNNTT
TTTTNCCNNNAAAAAAA----------AACAATTTAATGAAGCTGGTGAATTCATTGTTN
CCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAANANCAACAACAAGATC
ANCAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAAAG
ATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGAAA
ATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAAAC
CATCATCTAA
Length of connected seq. 540
Full length Seq ID -
Full length Seq. -
Length of full length seq. -