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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD196
Library CF
(Link to library)
Clone ID CFD196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID CFD196Z
(Link to Original site)
Representative DNA sequence 
>CFD196 (CFD196Q) /CSM/CF/CFD1-D/CFD196Q.Seq.d/
XXXXXXXXXXATTATCTCAAGTTAAACCAGAGAAATTAAAGATCTTTAAAGATTTTAAAC
TTTGGAATACAAATAATATTTGGGTTAATTTGAAATCAGTTTCAAATTTAATTAAAGAAG
ATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAATCATAAAGCAATGGTAC
AATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTG
TACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAA
ATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATG
TACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTA
AATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCCTGGTGATGTTTACTTT
GGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCCATGGTGAACGTGT
TGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---LSQVKPEKLKIFKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQ
LETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDV
PLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSW*cllwfknys*ryshycs*smvnvl
ifqmvwf*kik
Translated Amino Acid sequence (All Frames) 
Frame A:
---LSQVKPEKLKIFKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMVQ
LETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDV
PLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSW*cllwfknys*ryshycs*smvnvl
ifqmvwf*kik


Frame B:
---ylklnqrn*rslkilnfgiqiifgli*nqfqi*lkkin*i*iglliihlkiikqwyn
*khqqvwvfkilriqlqflyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmy
hllnwvknfqqfqimkrdlnqfqiywnwiillfpgdvyfgsritlkgtviivanpw*tc*
ysrwcgfrk*s


Frame C:
---iss*treikdl*rf*tleyk*ylg*feisfkfn*rr*irfrldc*lst*ks*sngti
rntsrygyskf*efscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsrct
tc*ig*rifnsfrl*kei*insrfigigssycflvmftlvqelllkvqsll*lihgervd
ipdgvvlenkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD196 (CFD196Q) /CSM/CF/CFD1-D/CFD196Q.Seq.d/                       1124   0.0
VFL461 (VFL461Q) /CSM/VF/VFL4-C/VFL461Q.Seq.d/                       1092   0.0
SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/                       1092   0.0
SSE519 (SSE519Q) /CSM/SS/SSE5-A/SSE519Q.Seq.d/                       1092   0.0
SSB729 (SSB729Q) /CSM/SS/SSB7-B/SSB729Q.Seq.d/                       1092   0.0
SFJ715 (SFJ715Q) /CSM/SF/SFJ7-A/SFJ715Q.Seq.d/                       1092   0.0
SFJ523 (SFJ523Q) /CSM/SF/SFJ5-A/SFJ523Q.Seq.d/                       1092   0.0
SFI711 (SFI711Q) /CSM/SF/SFI7-A/SFI711Q.Seq.d/                       1092   0.0
SFI662 (SFI662Q) /CSM/SF/SFI6-C/SFI662Q.Seq.d/                       1092   0.0
SFI489 (SFI489Q) /CSM/SF/SFI4-D/SFI489Q.Seq.d/                       1092   0.0
own update 2004. 8.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP;  EC 2.7.7.9).   611   0.0    4
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             30   5e-04  26
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   0.008  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.008  18
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   0.008  14
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   0.009  8
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    32   0.011  13
AF409138|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome.    34   0.029  8
AP003188|AP003188.2 Clostridium perfringens str. 13 DNA, complete genome, section 4/10.    36   0.031  11
AX348530|AX348530.1 Sequence 38 from Patent WO0202809.             50   0.035  1
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   305   3e-93
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   140   7e-40
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   140   7e-40
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   140   7e-40
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   140   7e-40
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   140   7e-40
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   140   9e-40
(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   145   9e-40
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   140   9e-40
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   140   9e-40
protein update 2009. 5.12
PSORT 

 psg: 0.63  gvh: 0.26  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFD196 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD196Z
3' end seq. 
>CFD196Z.Seq
----------ATTATCTCAAGTTAAACCAGAGAAATTAAAGATCTTTAAAGATTTTAAAC
TTTGGAATACAAATAATATTTGGGTTAATTTGAAATCAGTTTCAAATTTAATTAAAGAAG
ATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAATCATAAAGCAATGGTAC
AATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTG
TACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAA
ATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATG
TACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTA
AATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCCTGGTGATGTTTACTTT
GGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAATCCATGGTGAACGTGT
TGATATTCCAGATGGTGTGGTTTTAGAAAATAAAGTA
Length of 3' end seq. 567
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -