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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD190
Library CF
(Link to library)
Clone ID CFD190
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14182-1
Original site URL
Representative seq. ID CFD190P
(Link to Original site)
Representative DNA sequence 
>CFD190 (CFD190Q) /CSM/CF/CFD1-D/CFD190Q.Seq.d/
ATAAATTAAAAAAAAATGAATAAAGAAATTTTTAATTCAAAATTATTTGAAAAATTAGAT
AAAGATAATTTAATTGAAAATTCAAGAGAATGGAGTAATGAAATTGATTCAACATGGAAT
TATAATGATGTTGTTGGAATTTTAAAAAGTTGGGAATCATTAAATACAATTAGTTTAGAA
TATATTGATTCAATTGTAAATTGTTTAACAGAAACTGGTAAAGATATTTTAATTAATGGA
TCACCAGAAGCAAAATTATATAATATTTTAACAGAACAAGGTATGTCACCAGCTGATGCC
AATAAACAATTTGGTGCAACAGCATTTGGATCAGCCAAAAATAAAGGTTGGATTGAAGTT
AAAGCTGGTAAAATCTTTAAAAAAGTTGAATCAATTAATGATATTGTTAAATCTGATCTT
TCAATTCCAGACCTAAGTAAATTGGATTCGAAAACCTTAGAACAATATAAGAAATCAAGA
TTTATTGAAGAAAAGAAATTATCATATTATCGTGTTACCAAAGGTGAACAATATAATAAA
CGTTCAAAGGAATTATCAGATTTAACAATTGAAATGTTAAAAGATGATTCATGGGAAAAA
GAATCATTCAAAGTCAATATCAATGCAATGGGTGTTGTACCAXXXXXXXXXXTGAATATT
GTGAACGTGTTAAACAAGTTCATAGTGTTGGTGGTTATGGTTCATTGGGTTGGATTTATG
ATTGGAAACTTGAAGAAGCTNAAAAGAATATTCTTCGTACTCATACCACTGCTGTTAGTG
CTCGTATGTTATATAAATTGGCTCAAAATGGTTTTAAACCAAAGAAATACTTTTCAATTG
ATCGTGTTTTCCGTAATGAAACTTTGGATGCAACTCATTTAGCCGAATTTCATCAAGTCG
AAGGTGTTATTGCTGATGTTGACATTTCTTTAGGTCATTTAATTGGTGTTATCTCGGAAT
TCTTTAAACGTCTTGGTATTGATAATGTTCGTTTTAAACCAGCTTTCAATCCATATACTG
AACCATCAATGGAGATTTTCGGTTATCATCCAATTCTTAAACGTTGGGTTGAATTGGGTA
ATTCCTGGTATCTTTAGACCTGAACTTTTATTACCAATGGGTATTCCTGAAAATGTTAGA
GTTGCTGCTTGGGGTTTATCACTTGAACGTCCAACTATGATTAAATATGGTTTAGATAAT
ATTCGTGCAANCTTGGTAATAGTATTAATGTAAACTTATAAAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
in*KKMNKEIFNSKLFEKLDKDNLIENSREWSNEIDSTWNYNDVVGILKSWESLNTISLE
YIDSIVNCLTETGKDILINGSPEAKLYNILTEQGMSPADANKQFGATAFGSAKNKGWIEV
KAGKIFKKVESINDIVKSDLSIPDLSKLDSKTLEQYKKSRFIEEKKLSYYRVTKGEQYNK
RSKELSDLTIEMLKDDSWEKESFKVNINAMGVVP---

---EYCERVKQVHSVGGYGSLGWIYDWKLEEAXKNILRTHTTAVSARMLYKLAQNGFKPK
KYFSIDRVFRNETLDATHLAEFHQVEGVIADVDISLGHLIGVISEFFKRLGIDNVRFKPA
FNPYTEPSMEIFGYHPILKRWVELGNSWYL*t*tfitngys*kc*scclgfit*tsnyd*
iwfr*yscxlgnsinvnl*k
Translated Amino Acid sequence (All Frames) 
Frame A:
in*KKMNKEIFNSKLFEKLDKDNLIENSREWSNEIDSTWNYNDVVGILKSWESLNTISLE
YIDSIVNCLTETGKDILINGSPEAKLYNILTEQGMSPADANKQFGATAFGSAKNKGWIEV
KAGKIFKKVESINDIVKSDLSIPDLSKLDSKTLEQYKKSRFIEEKKLSYYRVTKGEQYNK
RSKELSDLTIEMLKDDSWEKESFKVNINAMGVVP---

---*il*tc*tss*cwwlwfigldl*let*rsxkeyssysyhcc*csyvi*igskwf*tk
eilfn*scfp**nfgcnsfsrisssrrcyc*c*hffrsfnwcylgil*tswy**csf*ts
fqsiy*tingdfrlssns*tlg*ig*flvsldlnfyyqwvflkmlelllgvyhlnvql*l
nmv*iifvqxw**y*ckliki

Frame B:
*ikkk*ikkfliqnylkn*ikii*lkiqengvmkliqhgiimmllef*kvgnh*iqlv*n
iliql*iv*qklvkif*lmdhqkqnyiif*qnkvchqlmpinnlvqqhldqpkikvglkl
klvkslkklnqlmillnlifqfqt*vnwirkp*nnirnqdllkkrnyhiivlpkvnniin
vqrnyqi*qlkc*kmihgkknhsksismqwvly---

---EYCERVKQVHSVGGYGSLGWIYDWKLEEAXKNILRTHTTAVSARMLYKLAQNGFKPK
KYFSIDRVFRNETLDATHLAEFHQVEGVIADVDISLGHLIGVISEFFKRLGIDNVRFKPA
FNPYTEPSMEIFGYHPILKRWVELGNSWYL*t*tfitngys*kc*scclgfit*tsnyd*
iwfr*yscxlgnsinvnl*k

Frame C:
klkkne*rnf*fkii*kir*r*fn*kfkrme**n*fnmel**ccwnfkklgiikyn*fri
y*fncklfnrnw*ryfn*witrskii*yfnrtryvts*cq*tiwcnsiwisqk*rld*s*
sw*nl*ks*in**yc*i*sfnsrpk*igfenlrti*eikiy*rkeiiilscyqr*ti**t
fkgiirfnn*nvkr*fmgkriiqsqyqcngcct---

---nivnvlnkfivlvvmvhwvgfmignlkklkriffvliplllvlvcyinwlkmvlnqr
ntfqlivfsvmklwmqli*pnfikskvlllmltfl*vi*lvlsrnslnvlvlimfvlnql
sihilnhqwrfsviiqflnvglnwvipgifrpelllpmgipenvrvaawglslerptmik
ygldniraxlvivlm*tykn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD190 (CFD190Q) /CSM/CF/CFD1-D/CFD190Q.Seq.d/                       2367   0.0
VHJ359 (VHJ359Q) /CSM/VH/VHJ3-C/VHJ359Q.Seq.d/                       1227   0.0
VFD368 (VFD368Q) /CSM/VF/VFD3-C/VFD368Q.Seq.d/                       1201   0.0
CFF432 (CFF432Q) /CSM/CF/CFF4-B/CFF432Q.Seq.d/                       1178   0.0
CFJ247 (CFJ247Q) /CSM/CF/CFJ2-B/CFJ247Q.Seq.d/                       1118   0.0
VFM620 (VFM620Q) /CSM/VF/VFM6-A/VFM620Q.Seq.d/                       1108   0.0
AFL512 (AFL512Q) /CSM/AF/AFL5-A/AFL512Q.Seq.d/                       1100   0.0
CFJ177 (CFJ177Q) /CSM/CF/CFJ1-D/CFJ177Q.Seq.d/                       1094   0.0
CFH662 (CFH662Q) /CSM/CF/CFH6-C/CFH662Q.Seq.d/                        989   0.0
VFH254 (VFH254Q) /CSM/VF/VFH2-C/VFH254Q.Seq.d/                        954   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE029776|BE029776.1 kp34f10.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similarsequence.    70   6e-19  3
AB008888|AB008888.1 Schizosaccharomyces pombe gene for Phd1p, complete cds.    80   7e-18  4
AZ931183|AZ931183.1 474.dhz63a07.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz63a07.s1, DNA sequence.   101   2e-17  1
BZ298172|BZ298172.1 CG4049.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4049, DNA sequence.    72   4e-15  4
BZ298701|BZ298701.1 CG4534.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4534, DNA sequence.    72   4e-15  4
AL021046|AL021046.4 S.pombe chromosome I cosmid c3G9.              80   2e-14  6
BZ298419|BZ298419.1 CG4179.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4179, DNA sequence.    72   1e-13  3
BX557442|BX557442.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse32d04_q1c.    50   2e-11  3
BG840634|BG840634.2 MEST14-C12.T7-1 ISUM4-TN Zea mays cDNA clone MEST14-C12 5', mRNA sequence.    52   2e-11  3
AW000230|AW000230.1 614009D03.y1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence.    52   3e-11  3
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KS8) RecName: Full=Phenylalanyl-tRNA synthetase alpha chain;...   417   e-115
AL050351_18(AL050351|pid:none) Arabidopsis thaliana DNA chromoso...   218   2e-83
(Q9W3J5) RecName: Full=Probable phenylalanyl-tRNA synthetase alp...   230   3e-75
AF000263_6(AF000263|pid:none) Caenorhabditis elegans cosmid T08B...   234   4e-74
BC013533_1(BC013533|pid:none) Mus musculus phenylalanyl-tRNA syn...   225   1e-73
BC116564_1(BC116564|pid:none) Danio rerio phenylalanyl-tRNA synt...   226   3e-73
(Q1JPX3) RecName: Full=Phenylalanyl-tRNA synthetase alpha chain;...   226   3e-73
BC066611_1(BC066611|pid:none) Danio rerio phenylalanyl-tRNA synt...   226   3e-73
(Q6AZG6) RecName: Full=Phenylalanyl-tRNA synthetase alpha chain ...   226   2e-72
(Q505J8) RecName: Full=Phenylalanyl-tRNA synthetase alpha chain;...   221   3e-72
protein update 2009. 5.12
PSORT 

 psg: 0.39  gvh: 0.38  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFD190 is nuc
5' end seq. ID CFD190F
5' end seq. 
>CFD190F.Seq
ATAAATTAAAAAAAAATGAATAAAGAAATTTTTAATTCAAAATTATTTGAAAAATTAGAT
AAAGATAATTTAATTGAAAATTCAAGAGAATGGAGTAATGAAATTGATTCAACATGGAAT
TATAATGATGTTGTTGGAATTTTAAAAAGTTGGGAATCATTAAATACAATTAGTTTAGAA
TATATTGATTCAATTGTAAATTGTTTAACAGAAACTGGTAAAGATATTTTAATTAATGGA
TCACCAGAAGCAAAATTATATAATATTTTAACAGAACAAGGTATGTCACCAGCTGATGCC
AATAAACAATTTGGTGCAACAGCATTTGGATCAGCCAAAAATAAAGGTTGGATTGAAGTT
AAAGCTGGTAAAATCTTTAAAAAAGTTGAATCAATTAATGATATTGTTAAATCTGATCTT
TCAATTCCAGACCTAAGTAAATTGGATTCGAAAACCTTAGAACAATATAAGAAATCAAGA
TTTATTGAAGAAAAGAAATTATCATATTATCGTGTTACCAAAGGTGAACAATATAATAAA
CGTTCAAAGGAATTATCAGATTTAACAATTGAAATGTTAAAAGATGATTCATGGGAAAAA
GAATCATTCAAAGTCAATATCAATGCAATGGGTGTTGTACCA----------
Length of 5' end seq. 642
3' end seq. ID CFD190Z
3' end seq. 
>CFD190Z.Seq
----------TGAATATTGTGAACGTGTTAAACAAGTTCATAGTGTTGGTGGTTATGGTT
CATTGGGTTGGATTTATGATTGGAAACTTGAAGAAGCTNAAAAGAATATTCTTCGTACTC
ATACCACTGCTGTTAGTGCTCGTATGTTATATAAATTGGCTCAAAATGGTTTTAAACCAA
AGAAATACTTTTCAATTGATCGTGTTTTCCGTAATGAAACTTTGGATGCAACTCATTTAG
CCGAATTTCATCAAGTCGAAGGTGTTATTGCTGATGTTGACATTTCTTTAGGTCATTTAA
TTGGTGTTATCTCGGAATTCTTTAAACGTCTTGGTATTGATAATGTTCGTTTTAAACCAG
CTTTCAATCCATATACTGAACCATCAATGGAGATTTTCGGTTATCATCCAATTCTTAAAC
GTTGGGTTGAATTGGGTAATTCCTGGTATCTTTAGACCTGAACTTTTATTACCAATGGGT
ATTCCTGAAAATGTTAGAGTTGCTGCTTGGGGTTTATCACTTGAACGTCCAACTATGATT
AAATATGGTTTAGATAATATTCGTGCAANCTTGGTAATAGTATTAATGTAAACTTATAAA
AATA
Length of 3' end seq. 594
Connected seq. ID CFD190P
Connected seq. 
>CFD190P.Seq
ATAAATTAAAAAAAAATGAATAAAGAAATTTTTAATTCAAAATTATTTGAAAAATTAGAT
AAAGATAATTTAATTGAAAATTCAAGAGAATGGAGTAATGAAATTGATTCAACATGGAAT
TATAATGATGTTGTTGGAATTTTAAAAAGTTGGGAATCATTAAATACAATTAGTTTAGAA
TATATTGATTCAATTGTAAATTGTTTAACAGAAACTGGTAAAGATATTTTAATTAATGGA
TCACCAGAAGCAAAATTATATAATATTTTAACAGAACAAGGTATGTCACCAGCTGATGCC
AATAAACAATTTGGTGCAACAGCATTTGGATCAGCCAAAAATAAAGGTTGGATTGAAGTT
AAAGCTGGTAAAATCTTTAAAAAAGTTGAATCAATTAATGATATTGTTAAATCTGATCTT
TCAATTCCAGACCTAAGTAAATTGGATTCGAAAACCTTAGAACAATATAAGAAATCAAGA
TTTATTGAAGAAAAGAAATTATCATATTATCGTGTTACCAAAGGTGAACAATATAATAAA
CGTTCAAAGGAATTATCAGATTTAACAATTGAAATGTTAAAAGATGATTCATGGGAAAAA
GAATCATTCAAAGTCAATATCAATGCAATGGGTGTTGTACCA----------TGAATATT
GTGAACGTGTTAAACAAGTTCATAGTGTTGGTGGTTATGGTTCATTGGGTTGGATTTATG
ATTGGAAACTTGAAGAAGCTNAAAAGAATATTCTTCGTACTCATACCACTGCTGTTAGTG
CTCGTATGTTATATAAATTGGCTCAAAATGGTTTTAAACCAAAGAAATACTTTTCAATTG
ATCGTGTTTTCCGTAATGAAACTTTGGATGCAACTCATTTAGCCGAATTTCATCAAGTCG
AAGGTGTTATTGCTGATGTTGACATTTCTTTAGGTCATTTAATTGGTGTTATCTCGGAAT
TCTTTAAACGTCTTGGTATTGATAATGTTCGTTTTAAACCAGCTTTCAATCCATATACTG
AACCATCAATGGAGATTTTCGGTTATCATCCAATTCTTAAACGTTGGGTTGAATTGGGTA
ATTCCTGGTATCTTTAGACCTGAACTTTTATTACCAATGGGTATTCCTGAAAATGTTAGA
GTTGCTGCTTGGGGTTTATCACTTGAACGTCCAACTATGATTAAATATGGTTTAGATAAT
ATTCGTGCAANCTTGGTAATAGTATTAATGTAAACTTATAAAAATA
Length of connected seq. 1236
Full length Seq ID -
Full length Seq. -
Length of full length seq. -