CFD188
Library CF
(Link to library)
Clone ID CFD188
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID CFD188Z
(Link to Original site)
Representative DNA sequence
>CFD188 (CFD188Q) /CSM/CF/CFD1-D/CFD188Q.Seq.d/
XXXXXXXXXXAACAATTGCCTCATTAGTCACTGGNACCACAAGTGNGTGGTGGTGGTATG
GGTTCATTTGGTGGTCGATCCCGATGAAGAATCAAGTGATCCCAAATGCTATACTTGGGC
TCCTTTGAAGAACGATATTTTGCTGGGGTGATAATGATGAATACTTTAAGTGATAACCTA
CCGTTATGTTGATGAAAGAAAGATATTG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---NCLISHWXHKXVVVVWVHLVVDPDEESSDPKCYTWAPLKNDILLG****il*vityr
yvderkil


Translated Amino Acid sequence (All Frames)
Frame A:
---tiaslvtgttsxwwwygfiwwsipmknqvipnailgll*rtifcwgdndeyfk**pt
vmlmkery


Frame B:
---qlph*slxpqvxgggmgsfggrsr*rik*sqmlylgsfeeryfagvimmntlsdnlp
lc**kkdi


Frame C:
---NCLISHWXHKXVVVVWVHLVVDPDEESSDPKCYTWAPLKNDILLG****il*vityr
yvderkil


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD188 (CFD188Q) /CSM/CF/CFD1-D/CFD188Q.Seq.d/ 381 e-105
CHP152 (CHP152Q) /CSM/CH/CHP1-C/CHP152Q.Seq.d/ 248 3e-65
CHA477 (CHA477Q) /CSM/CH/CHA4-D/CHA477Q.Seq.d/ 244 4e-64
CFI581 (CFI581Q) /CSM/CF/CFI5-D/CFI581Q.Seq.d/ 244 4e-64
CFD626 (CFD626Q) /CSM/CF/CFD6-B/CFD626Q.Seq.d/ 238 3e-62
CFI617 (CFI617Q) /CSM/CF/CFI6-A/CFI617Q.Seq.d/ 236 1e-61
CFH846 (CFH846Q) /CSM/CF/CFH8-B/CFH846Q.Seq.d/ 236 1e-61
CFG864 (CFG864Q) /CSM/CF/CFG8-C/CFG864Q.Seq.d/ 232 2e-60
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 228 3e-59
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 228 3e-59

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 70 5e-51 6
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 70 6e-51 6
AC090704|AC090704.2 Homo sapiens chromosome 15 clone RP11-421L3 map 15, LOW-PASS SEQUENCE SAMPLING. 38 0.026 2
AQ270570|AQ270570.1 HS_2046_B1_G02_T7 CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2046 Col=3 Row=N, genomic survey sequence. 44 0.73 1
BV007254|BV007254.1 LS366 Meadowfoam genomic DNA Limnanthes alba STS genomic, sequence tagged site. 42 2.9 1
AR384488|AR384488.1 Sequence 1217 from patent US 6610836. 42 2.9 1
AC068107|AC068107.6 Homo sapiens chromosome 11, clone RP11-807F21, complete sequence. 38 4.4 2
AC016450|AC016450.10 Homo sapiens chromosome 11, clone RP11-361K15, complete sequence. 38 4.6 2
AC122892|AC122892.3 Mus musculus chromosome UNK clone RP23-66P19, WORKING DRAFT SEQUENCE, 5 unordered pieces. 30 5.0 2
AP002538|AP002538.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06. 36 6.0 5
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 44 0.002
AP007150_482(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 32 8.6

protein update 2008.12.25
PSORT

psg: 0.91 gvh: 0.47 alm: 0.45 top: 0.50 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFD188 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD188Z
3' end seq.
>CFD188Z.Seq
----------AACAATTGCCTCATTAGTCACTGGNACCACAAGTGNGTGGTGGTGGTATG
GGTTCATTTGGTGGTCGATCCCGATGAAGAATCAAGTGATCCCAAATGCTATACTTGGGC
TCCTTTGAAGAACGATATTTTGCTGGGGTGATAATGATGAATACTTTAAGTGATAACCTA
CCGTTATGTTGATGAAAGAAAGATATTG
Length of 3' end seq. 198
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -