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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD164
Library CF
(Link to library)
Clone ID CFD164
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12864-1|Contig-U15756-1
Original site URL
Representative seq. ID CFD164P
(Link to Original site)
Representative DNA sequence 
>CFD164 (CFD164Q) /CSM/CF/CFD1-C/CFD164Q.Seq.d/
CTCATTTTGAAAGCAACCGAACCAAAGATGGTACTCTTCAATATCTATGATGATTGGTTA
TCAACAATTCATTCTTACACTGCTTTCCTTCGTTTGATTCTAATCTTACGTGCACTTCAT
GTCAATTTAGAACGTACTAAAATCATATTGAAACCAAATAAAAATGTTATCACTCAACCT
CATCATATTTGGCCAACTCTAACAGAACAAGAATGGTTAACCGTTGTAGGTTCATTGAAA
GATTTGATTTTAGCAGATTTTGGTAAAAGAAATAATGTAAACGTTGCTTCGCTCACTCAA
TCAGAGATTAGAGATATCATTTTGGGTATGGAAATTTCTGCACCATCACAACAACGTGAA
GATCAAATCGCAGAGATTGAAAAACAAAAAACAGAAGCATCTCATTTAACAGCCGTTACA
GTTCGTTCAACCAATATTCATGGTGAAGAGATTATCACAACCGCTACATCACCACATGAA
CAAAAAGTATTCTCTTCAAAAACAGATTGGCGTGTACGTGCTATCAGTGCAACTAATCTT
CATTTACGTACCAATCAAATCTATGTAAACTCTGATAACGCTAXXXXXXXXXXGGATGGT
GAGAAAACTGTTATCATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCAT
TTGACTCCAAGTGGTTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGT
TATCAACCACAATTCTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTC
TATATGGTACCTGATCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACA
AATATGACCTATGGTTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGA
CCTGCTCATTTCCAAAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAAT
CAACCTGAAAATGAAAATTTATTTGAATAATTATAAAAATAATATTTTNCTTTAAAAACA
TTTAAAAATAAATAAAAAAATANTAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LILKATEPKMVLFNIYDDWLSTIHSYTAFLRLILILRALHVNLERTKIILKPNKNVITQP
HHIWPTLTEQEWLTVVGSLKDLILADFGKRNNVNVASLTQSEIRDIILGMEISAPSQQRE
DQIAEIEKQKTEASHLTAVTVRSTNIHGEEIITTATSPHEQKVFSSKTDWRVRAISATNL
HLRTNQIYVNSDNA---

---DGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQGYQPQFYEKVQMLLSD
RFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQMAPSAN
DDEENQPENENLFE*l*k*yfxlktfknk*knxkk
Translated Amino Acid sequence (All Frames) 
Frame A:
LILKATEPKMVLFNIYDDWLSTIHSYTAFLRLILILRALHVNLERTKIILKPNKNVITQP
HHIWPTLTEQEWLTVVGSLKDLILADFGKRNNVNVASLTQSEIRDIILGMEISAPSQQRE
DQIAEIEKQKTEASHLTAVTVRSTNIHGEEIITTATSPHEQKVFSSKTDWRVRAISATNL
HLRTNQIYVNSDNA---

---gw*encyhlclcglalysnclpfdskwf*mg*k**rfsqlsrlsttil*egsnviir
sfpwflygt*swflel*fhgc*tfhkydlwfeirls*kll**is*tcsfpkldsngsfsk
***rkst*k*kfi*iiikiifxfkni*k*ikkx*k

Frame B:
sf*kqpnqrwyssismmigyqqfiltllsfv*f*syvhfmsi*nvlksy*nqikmlslnl
iifgql*qnkng*pl*vh*ki*f*qilvkeim*tllrslnqrleisfwvwkflhhhnnvk
iksqrlknkkqkhli*qplqfvqpifmvkrlsqplhhhmnkkyslqkqigvyvlsvqlif
iyvpiksm*tlitl---

---DGEKTVIISVSVAWPCTLTAYHLTPSGFEWGKNNKDSLNYQGYQPQFYEKVQMLLSD
RFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQMAPSAN
DDEENQPENENLFE*l*k*yfxlktfknk*knxkk

Frame C:
hfesnrtkdgtlqyl**lvinnsflhcfpsfdsnltctscqfrty*nhietk*kcyhsts
sylansnrtrmvnrcrfierfdfsrfw*kk*ckrcfahsird*ryhfgygnfctittt*r
snrrd*ktknrsisfnsryssfnqysw*rdyhnryitt*tksilfknrlactcyqcn*ss
ftyqsnlckl**r---

---mvrkllsslslwlglvl*llti*lqvvlngvkiikilsiikvinhnsmrrfkcyypi
vslvsiwylivvlgiiiswvlnipqi*pmv*n*iilktfmmnlidlliskiglkwllqqm
mmkkinlkmkiylnnyknnixl*khlkinkkixkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFD164 (CFD164Q) /CSM/CF/CFD1-C/CFD164Q.Seq.d/                       1782   0.0
VHA801 (VHA801Q) /CSM/VH/VHA8-A/VHA801Q.Seq.d/                        737   0.0
FC-AI07 (FC-AI07Q) /CSM/FC/FC-AI/FC-AI07Q.Seq.d/                      737   0.0
AHF452 (AHF452Q) /CSM/AH/AHF4-C/AHF452Q.Seq.d/                        722   0.0
FC-BT07 (FC-BT07Q) /CSM/FC/FC-BT/FC-BT07Q.Seq.d/                      718   0.0
AHN642 (AHN642Q) /CSM/AH/AHN6-B/AHN642Q.Seq.d/                        708   0.0
AHI237 (AHI237Q) /CSM/AH/AHI2-B/AHI237Q.Seq.d/                        662   0.0
VFA274 (VFA274Q) /CSM/VF/VFA2-D/VFA274Q.Seq.d/                         38   0.27
SSL142 (SSL142Q) /CSM/SS/SSL1-B/SSL142Q.Seq.d/                         38   0.27
VHL790 (VHL790Q) /CSM/VH/VHL7-D/VHL790Q.Seq.d/                         36   1.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   743   0.0    2
BI512028|BI512028.1 BB160007B20F02 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160007B20F02 5', mRNA sequence.    58   5e-15  4
BQ866008|BQ866008.1 QGC6L01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC6L01, mRNA sequence.    66   2e-09  2
BQ858263|BQ858263.1 QGB9M16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB9M16, mRNA sequence.    66   2e-09  2
AF397148|AF397148.1 Paramecium tetraurelia macronuclear pre-mRNA processing factor 8 gene, complete cds.    52   3e-08  4
AL659463|AL659463.2 Xenopus tropicalis EST, clone TNeu045j14 5'.    52   1e-06  2
AL640831|AL640831.2 Xenopus tropicalis EST, clone TNeu005i18 5'.    52   1e-06  2
CD837579|CD837579.1 BN45.052M21F020104 BN45 Brassica napus cDNA clone BN45052M21, mRNA sequence.    56   6e-06  2
CK768765|CK768765.1 Gm-r1030-1697 Gm-r1030 Glycine max cDNA clone Gm-r1030-1697 5', mRNA sequence.    52   2e-05  2
CD402585|CD402585.1 Gm_ck25171 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    52   2e-05  2
dna update 2004. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T295) RecName: Full=Pre-mRNA-processing-splicing factor 8 hom...   356   8e-97
AE013599_1462(AE013599|pid:none) Drosophila melanogaster chromos...   271   2e-71
BC064370_1(BC064370|pid:none) Homo sapiens PRP8 pre-mRNA process...   268   3e-70
AK296344_1(AK296344|pid:none) Homo sapiens cDNA FLJ57882 complet...   268   3e-70
AB007510_1(AB007510|pid:none) Homo sapiens mRNA for PRP8 protein...   268   3e-70
BC045266_1(BC045266|pid:none) Xenopus laevis pre-mRNA processing...   268   3e-70
BC034648_1(BC034648|pid:none) Mus musculus pre-mRNA processing f...   267   4e-70
AL591496_12(AL591496|pid:none) Mouse DNA sequence from clone RP2...   267   4e-70
(Q99PV0) RecName: Full=Pre-mRNA-processing-splicing factor 8; Al...   267   4e-70
AK099780_1(AK099780|pid:none) Oryza sativa Japonica Group cDNA c...   261   2e-68
protein update 2009. 5.12
PSORT 

 psg: 0.76  gvh: 0.45  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFD164 is cyt
5' end seq. ID CFD164F
5' end seq. 
>CFD164F.Seq
CTCATTTTGAAAGCAACCGAACCAAAGATGGTACTCTTCAATATCTATGATGATTGGTTA
TCAACAATTCATTCTTACACTGCTTTCCTTCGTTTGATTCTAATCTTACGTGCACTTCAT
GTCAATTTAGAACGTACTAAAATCATATTGAAACCAAATAAAAATGTTATCACTCAACCT
CATCATATTTGGCCAACTCTAACAGAACAAGAATGGTTAACCGTTGTAGGTTCATTGAAA
GATTTGATTTTAGCAGATTTTGGTAAAAGAAATAATGTAAACGTTGCTTCGCTCACTCAA
TCAGAGATTAGAGATATCATTTTGGGTATGGAAATTTCTGCACCATCACAACAACGTGAA
GATCAAATCGCAGAGATTGAAAAACAAAAAACAGAAGCATCTCATTTAACAGCCGTTACA
GTTCGTTCAACCAATATTCATGGTGAAGAGATTATCACAACCGCTACATCACCACATGAA
CAAAAAGTATTCTCTTCAAAAACAGATTGGCGTGTACGTGCTATCAGTGCAACTAATCTT
CATTTACGTACCAATCAAATCTATGTAAACTCTGATAACGCTA----------
Length of 5' end seq. 583
3' end seq. ID CFD164Z
3' end seq. 
>CFD164Z.Seq
----------GGATGGTGAGAAAACTGTTATCATCTCTGTCTCTGTGGCTTGGCCTTGTA
CTCTAACTGCTTACCATTTGACTCCAAGTGGTTTTGAATGGGGTAAAAATAATAAAGATT
CTCTCAATTATCAAGGTTATCAACCACAATTCTATGAGAAGGTTCAAATGTTATTATCCG
ATCGTTTCCTTGGTTTCTATATGGTACCTGATCGTGGTTCTTGGAATTATAATTTCATGG
GTGTTAAACATTCCACAAATATGACCTATGGTTTGAAATTAGATTATCCTAAAAACTTTT
ATGATGAATCTCATAGACCTGCTCATTTCCAAAATTGGACTCAAATGGCTCCTTCAGCAA
ATGATGATGAAGAAAATCAACCTGAAAATGAAAATTTATTTGAATAATTATAAAAATAAT
ATTTTNCTTTAAAAACATTTAAAAATAAATAAAAAAATANTAAAAAAA
Length of 3' end seq. 458
Connected seq. ID CFD164P
Connected seq. 
>CFD164P.Seq
CTCATTTTGAAAGCAACCGAACCAAAGATGGTACTCTTCAATATCTATGATGATTGGTTA
TCAACAATTCATTCTTACACTGCTTTCCTTCGTTTGATTCTAATCTTACGTGCACTTCAT
GTCAATTTAGAACGTACTAAAATCATATTGAAACCAAATAAAAATGTTATCACTCAACCT
CATCATATTTGGCCAACTCTAACAGAACAAGAATGGTTAACCGTTGTAGGTTCATTGAAA
GATTTGATTTTAGCAGATTTTGGTAAAAGAAATAATGTAAACGTTGCTTCGCTCACTCAA
TCAGAGATTAGAGATATCATTTTGGGTATGGAAATTTCTGCACCATCACAACAACGTGAA
GATCAAATCGCAGAGATTGAAAAACAAAAAACAGAAGCATCTCATTTAACAGCCGTTACA
GTTCGTTCAACCAATATTCATGGTGAAGAGATTATCACAACCGCTACATCACCACATGAA
CAAAAAGTATTCTCTTCAAAAACAGATTGGCGTGTACGTGCTATCAGTGCAACTAATCTT
CATTTACGTACCAATCAAATCTATGTAAACTCTGATAACGCTA----------GGATGGT
GAGAAAACTGTTATCATCTCTGTCTCTGTGGCTTGGCCTTGTACTCTAACTGCTTACCAT
TTGACTCCAAGTGGTTTTGAATGGGGTAAAAATAATAAAGATTCTCTCAATTATCAAGGT
TATCAACCACAATTCTATGAGAAGGTTCAAATGTTATTATCCGATCGTTTCCTTGGTTTC
TATATGGTACCTGATCGTGGTTCTTGGAATTATAATTTCATGGGTGTTAAACATTCCACA
AATATGACCTATGGTTTGAAATTAGATTATCCTAAAAACTTTTATGATGAATCTCATAGA
CCTGCTCATTTCCAAAATTGGACTCAAATGGCTCCTTCAGCAAATGATGATGAAGAAAAT
CAACCTGAAAATGAAAATTTATTTGAATAATTATAAAAATAATATTTTNCTTTAAAAACA
TTTAAAAATAAATAAAAAAATANTAAAAAAA
Length of connected seq. 1041
Full length Seq ID -
Full length Seq. -
Length of full length seq. -