CFD155
Library CF
(Link to library)
Clone ID CFD155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID CFD155Z
(Link to Original site)
Representative DNA sequence
>CFD155 (CFD155Q) /CSM/CF/CFD1-C/CFD155Q.Seq.d/
XXXXXXXXXXCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAA
AAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAA
AAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACT
CCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCA
ACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCA
ACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGT
GGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGAT
ATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAA
GATATTGATGAAGATTTCAATGGTAATGATNCNNTTGNAATTGATGCTGAAGGTGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---svfhhqkvlarlfnvqkvtnansmlmvqhv*RLKNQKCLTCKDMHCESNGLLCVLTP
QKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGG
RSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDXXXIDAEGD


Translated Amino Acid sequence (All Frames)
Frame A:
---icvpspkgtcktvqcpkgykcklyadgptcvkiekpkmshl*ryal*vkwitlclds
tked**rmlsnysnlyqsinycrihychyncinsslnclnnclishwyhkwwwwygfiww
sir*rik*skcytwsl*rryflg****il***lplc**rry**rfqw**xxxn*c*r*


Frame B:
---svfhhqkvlarlfnvqkvtnansmlmvqhv*RLKNQKCLTCKDMHCESNGLLCVLTP
QKKTDEECCPIIPICINPSTIAASTIATTTASTRHSTASTIASLVTGTTSGGGGMGSFGG
RSDEESSDPNAILGLFEDDIFWGDNDEYFSDNYRYVDEEDIDEDFNGNDXXXIDAEGD


Frame C:
---lcsitkrylqdcsmskrlqmqtlc*wsnmckd*ktknvslvkicivsqmdysvs*lh
krrlmknvvqlfqsvsihqllphpllplqlhqlvtqlpqqlph*slvpqvvvvvwvhlvv
dpmknqviqmlylvslktifsgvimmntlvittvmlmkkilmkismvmxxlxlmlkv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFD155 (CFD155Q) /CSM/CF/CFD1-C/CFD155Q.Seq.d/ 1021 0.0
SHG454 (SHG454Q) /CSM/SH/SHG4-C/SHG454Q.Seq.d/ 999 0.0
CFI282 (CFI282Q) /CSM/CF/CFI2-D/CFI282Q.Seq.d/ 999 0.0
CFC751 (CFC751Q) /CSM/CF/CFC7-C/CFC751Q.Seq.d/ 997 0.0
SFI419 (SFI419Q) /CSM/SF/SFI4-A/SFI419Q.Seq.d/ 991 0.0
CHG616 (CHG616Q) /CSM/CH/CHG6-A/CHG616Q.Seq.d/ 991 0.0
CHD412 (CHD412Q) /CSM/CH/CHD4-A/CHD412Q.Seq.d/ 991 0.0
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 989 0.0
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 989 0.0
SSC714 (SSC714Q) /CSM/SS/SSC7-A/SSC714Q.Seq.d/ 989 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 789 0.0 2
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 789 0.0 2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 0.001 10
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence. 50 0.033 1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 50 0.033 1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 50 0.033 1
CD951782|CD951782.1 SAY_66 GeneTag2 Zea mays cDNA, mRNA sequence. 48 0.13 1
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complete sequence. 48 0.13 1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2993 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence. 48 0.13 1
AC135363|AC135363.2 Mus musculus chromosome UNK clone RP23-341B24, WORKING DRAFT SEQUENCE, 18 unordered pieces. 40 0.43 6
dna update 2004. 3. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 160 3e-58
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 39 0.10
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 39 0.10
A96599(A96599) protein F20N2.10 [imported] - Arabidopsis thalian... 37 0.24
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 37 0.40
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 37 0.40
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 37 0.40
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 37 0.40
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 31 0.44
AE001362_82(AE001362|pid:none) Plasmodium falciparum 3D7 chromos... 35 0.90
protein update 2009. 5.12
PSORT

psg: 0.57 gvh: 0.53 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CFD155 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFD155Z
3' end seq.
>CFD155Z.Seq
----------CATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCAA
AAGGTTACAAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCAA
AAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACT
CCACAAAAGAAGACTGATGAAGAATGTTGTCCAATTATTCCAATCTGTATCAATCCATCA
ACTATTGCCGCATCCACTATTGCCACTACAACTGCATCAACTCGTCACTCAACTGCCTCA
ACAATTGCCTCATTAGTCACTGGTACCACAAGTGGTGGTGGTGGTATGGGTTCATTTGGT
GGTCGATCCGATGAAGAATCAAGTGATCCAAATGCTATACTTGGTCTCTTTGAAGACGAT
ATTTTCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAA
GATATTGATGAAGATTTCAATGGTAATGATNCNNTTGNAATTGATGCTGAAGGTGAT
Length of 3' end seq. 527
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -