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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFD147
Library CF
(Link to library)
Clone ID CFD147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFD147F
(Link to Original site)
Representative DNA sequence 
>CFD147 (CFD147Q) /CSM/CF/CFD1-B/CFD147Q.Seq.d/
TGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAA
ATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
csilfifklnintikks*n*ickinl*qklvi*kk---


Frame B:
vvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkk---


Frame C:
*yfvhiqikyqyn*kklklnl*nqfvtktsnlkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        151   2e-36
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        151   2e-36
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        151   2e-36
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        151   2e-36
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        151   2e-36
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/                        151   2e-36
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        151   2e-36
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/                        151   2e-36
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/                        151   2e-36
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/                        151   2e-36
own update 2004. 5. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    84   8e-30  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   2e-27  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    84   4e-13  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   7e-12  1
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.013  5
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces.    28   0.013  9
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.023  4
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.028  2
AC127429|AC127429.23 Medicago truncatula clone mth2-9o20, WORKING DRAFT SEQUENCE.    34   0.030  6
BX322575|BX322575.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-283E2.    32   0.044  7
dna update 2004. 3. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 85,114,509
protein update 2009. 5.12
PSORT -
5' end seq. ID CFD147F
5' end seq. 
>CFD147F.Seq
TGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAA
ATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -